BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0055.p (252 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312691|ref|YP_003776783.1| sugar ABC transporter permease ... 352 2e-98 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 79 4e-16 gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ... 79 5e-16 gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease ... 78 6e-16 gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease ... 78 7e-16 >gi|300312691|ref|YP_003776783.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 292 Score = 352 bits (902), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/231 (73%), Positives = 197/231 (85%) Query: 1 MEDRRFLNAIKVSAQWEAVTVTGTLLVGVLLAIWLFEKTTPRTRNLLSVLLIIPVLLPRV 60 M DRRFLNAI+VSA WE VTV G ++VG+ +A++LFE + R + VLLI PVLLPRV Sbjct: 59 MSDRRFLNAIEVSAVWEVVTVLGAVIVGIAIAVYLFENVHGKWRQAMCVLLITPVLLPRV 118 Query: 61 SAAFLWKFMFSPLLGIVSWLLGFVGLGNIAFLSDPGLALLAAAFVDIWQWGLFFAVIVLK 120 SAAF+WKFM+SPL GI+ WLLG VG+ + AFLSDP LAL A A VDIWQWGLFFAVIVLK Sbjct: 119 SAAFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPALALYAVALVDIWQWGLFFAVIVLK 178 Query: 121 LLETLPPEPLEAARIDYARSWELYALVALPMLRAPLVSLTLIKMIESLRSFDLIYVMTKG 180 LLETLPPEPLEAAR+DYAR+W++YA +ALPML+ PL+SL IKM+ESLRSFDLIYVMTKG Sbjct: 179 LLETLPPEPLEAARLDYARTWQVYAYIALPMLKGPLISLVFIKMVESLRSFDLIYVMTKG 238 Query: 181 GPGIATETLDMYAYSQGIGLSGDISYASAMAVLMMILTTALFTIIWKRAKK 231 GPG+ATETLDMYAY+QGIGLSG +SYAS MAVLMMI TT +FT+IWKR K Sbjct: 239 GPGVATETLDMYAYAQGIGLSGKVSYASTMAVLMMIATTLIFTLIWKRVSK 289 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 109/202 (53%), Gaps = 12/202 (5%) Query: 18 AVTVTGTLLVGVLLAIWLFEKTTPRTRNLLSVLLIIPVLLPRVSAAFLWKFM-FSPLLGI 76 A++V G G LLA+ LF++ R R + +L+I P + AA +WK M P+ GI Sbjct: 111 AISVIG----GTLLAV-LFDQPF-RGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGI 164 Query: 77 VSWLLGFVGLGNIAFLSDPGLALLAAAFVDIWQWGLFFAVIVLKLLETLPPEPLEAARID 136 +++++ +GL I +L++ +L+ + WQW F +I+L L++L + EAA++D Sbjct: 165 LAYVMRHLGLEPIDWLAE--YPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLD 222 Query: 137 YARSWELYALVALPMLRAPLVSLTLIKMIESLRSFDLIYVMTKGGPGIATETLDMYAYSQ 196 A ++ + LP L+ + + +I+ I L F I+ T GGPG AT L YS Sbjct: 223 GAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVYS- 281 Query: 197 GIGLSG-DISYASAMAVLMMIL 217 IGL DI ASA + ++L Sbjct: 282 -IGLQQFDIGIASAGGIFAVVL 302 >gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 78.6 bits (192), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 7/186 (3%) Query: 27 VGVLLAIWLFEKTTPRTRNLLSVLLIIPVLLPRVSAAFLWKFMFSPLLGIVSWLLGFVGL 86 +G+ +A++L +K ++ L P +L V ++ + + P G++S L G Sbjct: 111 MGLAIALYLNQKVI--GMRVVKSLFFAPFVLSGVVVGLMYSWFYDPSFGLLSLLFG---- 164 Query: 87 GNIAFLSDPGLALLAAAFVDIWQWGLFFAVIVLKLLETLPPEPLEAARIDYARSWELYAL 146 + L D A F +W + ++ L L L + +EAAR++ A+ W + Sbjct: 165 QGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARMEGAKGWTMLRY 224 Query: 147 VALPMLRAPLVSLTLIKMIESLRSFDLIYVMTKGGPGIATETLDMYAYSQGIGLSGDISY 206 V LP LR+ ++ +I +LRSFDLI VMT GGP ++ L YAY Q I Y Sbjct: 225 VILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESSTVLAYYAYDQAIKYYRQ-GY 283 Query: 207 ASAMAV 212 ++A+AV Sbjct: 284 SAAVAV 289 >gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 78.2 bits (191), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 5/193 (2%) Query: 25 LLVGVLLAIWLFEKTTPRTRNLLSVLLIIPVLLPRVSAAFLWKFMFSPLLGIVSWLLGFV 84 ++G+ LAI L K P + ++++P ++P +A + +++ ++SW L + Sbjct: 85 FMLGLWLAI-LLNKNVP-LKTFFRAIVLLPWIVPTALSALAFWWLYDAQFSVISWALHKM 142 Query: 85 GLGN--IAFLSDPGLALLAAAFVDIWQWGLFFAVIVLKLLETLPPEPLEAARIDYARSWE 142 GL + I FL DP A + F ++W+ F A+ +L L+T+ P EAA ID A W+ Sbjct: 143 GLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEAAAIDGATPWQ 202 Query: 143 LYALVALPMLRAPLVSLTLIKMIESLRSFDLIYVMTKGGPGIATETLDMYAYSQGIGLSG 202 + V LP+L + + ++ + F LIYV+T+GGP AT + ++ + I G Sbjct: 203 QFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATLSFQRAIP-GG 261 Query: 203 DISYASAMAVLMM 215 + +A+A M+ Sbjct: 262 ALGEGAALATYMI 274 >gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 77.8 bits (190), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 3/205 (1%) Query: 2 EDRRFLNAIKVSAQWEAVTVTGTLLVGVLLAIWLFEKTTPRTRNLLSVLLIIPVLLPRVS 61 +D F A+ + + T+ + + +L+A+W+ EK R +L + P +LP ++ Sbjct: 60 DDPVFWQALCNNLWFALGTIPLAIALAILMALWVNEKLA--GRGVLRLAYFTPTVLPMIA 117 Query: 62 AAFLWKFMFSPLLGIVSWLLGFVGLGNIAFLSDPGLALLAAAFVDIWQWGLFFAVIVLKL 121 A +W F ++P G++ + G +GL + +L +P L A V +W+ FF + L Sbjct: 118 VANIWLFFYTPQYGLLEQITGALGLPSHNWLGNPQTVLGALMVVAVWKEAGFFMIFYLAA 177 Query: 122 LETLPPEPLEAARIDYARSWELYALVALPMLRAPLVSLTLIKMIESLRSFDLIYVMTKGG 181 L+ + P EAA ++ A W+ + V P+L + + + +I + R D I VMTKGG Sbjct: 178 LQQISPVLAEAAALEGASRWQYFWRVQFPLLMPTTLFVLINALINAFRLVDHIVVMTKGG 237 Query: 182 PGIATETLDMYAYSQGIGLSGDISY 206 P A+ L Y Y G D SY Sbjct: 238 PDNASSLLLYYIYEVGFAF-WDSSY 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 665,205 Number of extensions: 22271 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 9 Length of query: 252 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 169 Effective length of database: 1,226,865 Effective search space: 207340185 Effective search space used: 207340185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)