BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0052.p (363 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 420 e-119 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 352 2e-98 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 346 2e-96 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 335 3e-93 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 327 1e-90 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 420 bits (1080), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/365 (58%), Positives = 273/365 (74%), Gaps = 4/365 (1%) Query: 1 MASIVCDKLAKNYEGNP-VVHDFSMEIADAEFIVLLGPSGCGKSTILRMMAGLEDISDGA 59 MA I C LAK+Y G P V+H + I D EF+VLLGPSGCGKST+LRM+AGLEDIS G Sbjct: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 Query: 60 LHIGARQVNDLPPRERDIAMVFQNYALYPHMTVYDNMAFGLRRLKTPESEIKIRVEQVAQ 119 L IG VNDLP RER++AMVFQNYALYPHM+VYDN+AFGLRRLK P +EI RV +VA Sbjct: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 Query: 120 MLSLEPLLQRKPKQISGGQQQRVAIGRAMIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 179 +L+LE LL+RKP+ +SGGQQQR AI RA+IKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL Sbjct: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 180 HRQLATTSVYVTHDQLEAMTLADRIVLLKAGRIEQIGTPAQIYNHPVSKFAAGFIGTPAM 239 H++L TT+VYVTHDQLEAMTLADR++L++ GRI Q G+PA++Y +P + FAAGFIGTPAM Sbjct: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 Query: 240 NFIDCVASQENGMTVLDSGAAKWRLPQSLFA-IAHGQPVVLGIRPNHMSIMGVDD--ESI 296 NF+ +++G +++ +W L F+ + H V L +RP+H+ I G + S+ Sbjct: 241 NFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASL 300 Query: 297 EVQGRVDLVELLGAESLVSLLHASHEISALVPANRCPQTGTQVCFNVSINNLHVFDAESG 356 V+LVE+LGA++L++ ++ALVPA+R PQ G + + + LHVFD ESG Sbjct: 301 TCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESG 360 Query: 357 RSLVL 361 +L L Sbjct: 361 ENLSL 365 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 352 bits (904), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 189/368 (51%), Positives = 249/368 (67%), Gaps = 14/368 (3%) Query: 1 MASIVCDKLAKNYEGNP----VVHDFSMEIADAEFIVLLGPSGCGKSTILRMMAGLEDIS 56 MA+I ++ K Y V+H EIAD EFIV++GPSGCGKST+LRM+AGLE+IS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 DGALHIGARQVNDLPPRERDIAMVFQNYALYPHMTVYDNMAFGLRRLKTPESEIKIRVEQ 116 G + IG R VNDL P+ERDIAMVFQNYALYPHMTVY NMA+GL+ +SEI RV++ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 VAQMLSLEPLLQRKPKQISGGQQQRVAIGRAMIKTPSVFLFDEPLSNLDAKLRAQLRGDI 176 A +L L LL+R P+Q+SGGQ+QRVA+GRA+++ P+VFLFDEPLSNLDAKLR Q+R +I Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 KRLHRQLATTSVYVTHDQLEAMTLADRIVLLKAGRIEQIGTPAQIYNHPVSKFAAGFIGT 236 ++LH L TTS+YVTHDQ+EAMTL R++++ G EQIGTPA++Y P + F A FIG+ Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PAMNFIDCVASQENGMTVLDSGAAK--WRLPQSLFAIAHGQPVVLGIRPNHMSIMGVDDE 294 P MN + S + + G A RLPQ L A GQ +LG+RP H+ + +D Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAA-GQERILGVRPEHLLPI-LDGS 298 Query: 295 SIEVQGRVDLVELLGAESLVSLLHASHEISALV---PANRCPQTGTQVCFNVSINNLHVF 351 + ++ V+LVE LGAE LV HA ALV PAN +TG ++ + ++H F Sbjct: 299 AAQLSLEVELVEALGAELLV---HARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWF 355 Query: 352 DAESGRSL 359 D +S R + Sbjct: 356 DVKSTRRI 363 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 346 bits (887), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 181/363 (49%), Positives = 247/363 (68%), Gaps = 17/363 (4%) Query: 1 MASIVCDKLAKNYEGNPVVHDFSMEIADAEFIVLLGPSGCGKSTILRMMAGLEDISDGAL 60 MA++ LAK Y+ N V+ D ++EI D EF+V +GPSGCGKST+LRM+AGLE+ISDG L Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 HIGARQVNDLPPRERDIAMVFQNYALYPHMTVYDNMAFGLRRLKTPESEIKIRVEQVAQM 120 IGAR++N++P +R +AMVFQ+YALYPHM++YDNMAFGL+ ++EI V+ A++ Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LSLEPLLQRKPKQISGGQQQRVAIGRAMIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLH 180 L ++ LL RKP+ +SGGQ+QRVAIGRA+ + PSVFLFDEPLSNLDA LR ++R + +LH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 RQLATTSVYVTHDQLEAMTLADRIVLLKAGRIEQIGTPAQIYNHPVSKFAAGFIGTPAMN 240 L TT +YVTHDQ+EAMTLAD+IV+L GRIEQ+G+P Q+Y+HP ++F AGFIG+P MN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 FID--CVASQENGMTV-LDSGAAKW-RLPQSLFAIAHGQPVVLGIRPNHMSIMGVDDESI 296 FID A Q +G+ V L G +W + S + GQ V LG+RP H++I Sbjct: 241 FIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQV--GQKVTLGVRPEHLNIA---QGQA 295 Query: 297 EVQGRVDLVELLGAESLVSLLHASHEISALVPANRCPQT-----GTQVCFNVSINNLHVF 351 +Q R +ELLG S L+A++E S R P + G+ + H+F Sbjct: 296 ALQARCTALELLGD---FSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLF 352 Query: 352 DAE 354 A+ Sbjct: 353 GAD 355 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 335 bits (859), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 176/327 (53%), Positives = 229/327 (70%), Gaps = 13/327 (3%) Query: 1 MASIVCDKLAKNY-EGNPVVHDFSMEIADAEFIVLLGPSGCGKSTILRMMAGLEDISDGA 59 MASI K Y + PV+ + ++I + EF V LGPSGCGKST+LR +AGLED++ G Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 LHIGARQVNDLPPRERDIAMVFQNYALYPHMTVYDNMAFGLRRLKTPESEIKIRVEQVAQ 119 L IG ++VND+P +R +AMVFQ+YAL+PHMTVY+NM+FGL K P++EI+ +V + A+ Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 MLSLEPLLQRKPKQISGGQQQRVAIGRAMIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 179 +L LE LLQRKPK++SGGQ+QRVAIGRA+++ P VFLFDEPLSNLDA LR+Q R +I RL Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 180 HRQLATTS-VYVTHDQLEAMTLADRIVLLKA-------GRIEQIGTPAQIYNHPVSKFAA 231 HRQ S VYVTHDQ+EAMTLADRIVLL A G I Q+GTP ++Y+HP ++F A Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 232 GFIGTPAMNFI--DCVASQENGMTVLDSGAAKWRLPQSLFAIAHGQPVVLGIRPNHMSIM 289 GFIG+P MNF+ QENG+ V SG+ + L + A+ GQ V +G+RP HM I Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIG 300 Query: 290 GVDDESIEVQGRVDLVELLGAESLVSL 316 I + V LVE LG ++ V L Sbjct: 301 SQGQYGIHRE--VVLVERLGEQTYVHL 325 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 327 bits (838), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 176/377 (46%), Positives = 238/377 (63%), Gaps = 31/377 (8%) Query: 1 MASIVCDKLAKNYEGNPVVHDFSMEIADAEFIVLLGPSGCGKSTILRMMAGLEDISDGAL 60 MAS+ + K + ++ ++IAD EF VL+GPSGCGKST+LRM+AGLE+I+ G + Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 HIGARQVNDLPPRERDIAMVFQNYALYPHMTVYDNMAFGLRRLKTPESEIKIRVEQVAQM 120 IG VN++ P++RDIAMVFQNYALYPHMTV DNMAF L K ++ + RV++ A + Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LSLEPLLQRKPKQISGGQQQRVAIGRAMIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLH 180 L L LL R P+Q+SGGQ+QRVA+GRA+++ P VFLFDEPLSNLDAKLR Q+R +IK LH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 RQLATTSVYVTHDQLEAMTLADRIVLLKAGRIEQIGTPAQIYNHPVSKFAAGFIGTPAMN 240 ++L TTS+YVTHDQ+EAMT+AD+IV+++ G +EQ G P +Y++P + F AGFIG+PAMN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 FIDCVASQENGMTVLDSGAAKWRLPQSLFAIAH---GQPVVLGIRPNHMSI----MGVDD 293 FI + N A R+P A GQ V G+RP H+SI G+ Sbjct: 241 FIPATL-RRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAGQGIAT 299 Query: 294 ESIEVQ---GRVDLVELLGAESLVSLLHASHEISA-----LVPANRCPQTGTQVCFNVSI 345 + I V+ ++ G SL S+ H+ A LVP + Sbjct: 300 KVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDH--------------- 344 Query: 346 NNLHVFDAESGRSLVLR 362 + H+FDAESG+SL R Sbjct: 345 SRTHLFDAESGKSLAGR 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,108,886 Number of extensions: 45713 Number of successful extensions: 544 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 138 Length of query: 363 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 277 Effective length of database: 1,212,660 Effective search space: 335906820 Effective search space used: 335906820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)