BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0046.p
         (118 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312025|ref|YP_003776117.1| bifunctional glutathione-depend...   141   2e-35
gi|300312106|ref|YP_003776198.1| zinc-type alcohol dehydrogenase...    58   2e-10
gi|300310297|ref|YP_003774389.1| alcohol dehydrogenase [Herbaspi...    57   4e-10

>gi|300312025|ref|YP_003776117.1| bifunctional
          glutathione-dependent formaldehyde
          dehydrogenase/alcohol dehydrogenase class III
          oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score =  141 bits (355), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/69 (98%), Positives = 69/69 (100%)

Query: 22 MKTKAAVAWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAIL 81
          MKT+AAVAWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAIL
Sbjct: 1  MKTRAAVAWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAIL 60

Query: 82 GHEGAGVVV 90
          GHEGAGVVV
Sbjct: 61 GHEGAGVVV 69


>gi|300312106|ref|YP_003776198.1| zinc-type alcohol dehydrogenase
          transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 22 MKTKAAV--------AWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADP 73
          MK +AAV         +   +PL IEE++L  P  GEVLV +KA G+CH+D   ++G  P
Sbjct: 1  MKIQAAVLREMSDAHPFAVSQPLKIEELDLDPPGPGEVLVRMKAAGLCHSDLSVITGVRP 60

Query: 74 EGIFPAILGHEGAGVVV 90
            + P  LGHE +  VV
Sbjct: 61 RPV-PMALGHEASAEVV 76


>gi|300310297|ref|YP_003774389.1| alcohol dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score = 57.0 bits (136), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 25 KAAVAWQAGKPLTIEEVELGGPKAGEVLVEIKATGICHTDYYTLSGADP-EGIFPAILGH 83
          KAAV  + GKPL+IE+V +  P  G++LV+ +A+G+CHTD +   G  P +   P I GH
Sbjct: 6  KAAVVREFGKPLSIEQVPVPTPAPGQILVKFEASGVCHTDLHAAHGDWPVKPTPPFIPGH 65

Query: 84 EGAGVV 89
          EG G V
Sbjct: 66 EGTGYV 71


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 344,167
Number of extensions: 12374
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 3
Length of query: 118
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,269,480
Effective search space: 55857120
Effective search space used: 55857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)