BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0045.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312026|ref|YP_003776118.1| signal transduction protein con...   192   1e-50

>gi|300312026|ref|YP_003776118.1| signal transduction protein
           containing a membrane domain, an EAL and a GGDEF
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1106

 Score =  192 bits (488), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 135/195 (69%), Gaps = 1/195 (0%)

Query: 1   MVAVRSVEEHAERILADIDHMLTSASVAIQTADQHILDDDVGLYQLLSNEKQALAPVQSL 60
           + A RS++EHA R+  D++  + S +V +      +L++D GLY +L++ +Q L  V  L
Sbjct: 99  LTAARSIQEHATRVFNDLEQTMWSTAVQLHAGGPELLENDQGLYNVLASMQQRLPTVMVL 158

Query: 61  RFVDMTGVSRASSMRVGATEIELNDLQLREVDANPALPHYFIGTLAKSRSNQELVLPIAR 120
           R+VD  G +RA+S+R   T     D +L  VD NPA P+ F+G L +SR N+ELVLP+A 
Sbjct: 159 RYVDRNGNTRATSLRSLDTSSIPEDRKLTYVDGNPARPNLFVGQLMRSRYNRELVLPVAM 218

Query: 121 NLYMR-GQHVGMIVAELRVSYFFDFYKRITNYQAIVSLRKDDGSLMIRSPFEQAWLDRSL 179
           NLY R  + +G++VAELR + FFDFYKRITN++AIVSLR + GS+M+RSPFE+ WLD +L
Sbjct: 219 NLYDRSARPIGLLVAELRAATFFDFYKRITNFEAIVSLRTESGSMMLRSPFEERWLDVNL 278

Query: 180 RDAKSMIHIRNGPAE 194
            DAKSM +IR G  E
Sbjct: 279 ADAKSMTYIRAGGDE 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 582,687
Number of extensions: 21251
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)