BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0044.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312026|ref|YP_003776118.1| signal transduction protein con...   246   1e-66

>gi|300312026|ref|YP_003776118.1| signal transduction protein
           containing a membrane domain, an EAL and a GGDEF
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1106

 Score =  246 bits (629), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 153/188 (81%), Gaps = 4/188 (2%)

Query: 1   MVAVYARRMDDVLSPWKSRTLNRILLSIGISGFIVLALIAFLIYYNYKQKRDDVLTESEH 60
           +VAVYARRM+DVL+PW+SRT NRILL+ GI GFI++ALI+FL+YY Y+++ D  L+ SE+
Sbjct: 319 LVAVYARRMNDVLAPWRSRTENRILLTTGILGFILIALISFLVYYRYQRRLDHALSASEY 378

Query: 61  RYRKLYEEGSDPIVLLSPDMLYIDCNAAAVKFFGVADKQRIIGKKVGLFSRQSALQLQQP 120
           RYRKLYEEG+DPIVL+S ++ Y+DCNAAA++FFGV DK+RIIG+KVGLFSRQ +  ++QP
Sbjct: 379 RYRKLYEEGNDPIVLISAELRYLDCNAAALRFFGVPDKERIIGRKVGLFSRQKSRHMEQP 438

Query: 121 DIAKLIEKAIDGEPQQFEWVTIRRHKIIYTDVTINRTELDKGFAIFX----PRARARAAR 176
           DI +L+ + + G+PQQFEWVT+RR+KII+TDVT+NR E ++G+AIF       AR RA  
Sbjct: 439 DIDELVARVLSGQPQQFEWVTVRRNKIIHTDVTLNRAEFERGYAIFAILRDISARKRAEL 498

Query: 177 LHDHADRA 184
           L    +R 
Sbjct: 499 LQSEQNRV 506


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,285
Number of extensions: 29006
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)