BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0039.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312027|ref|YP_003776119.1| major facilitator superfamily p...   545   e-156

>gi|300312027|ref|YP_003776119.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  545 bits (1404), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 313/407 (76%), Positives = 348/407 (85%), Gaps = 6/407 (1%)

Query: 7   PEQLLHHRSFRLFWLASVASTIALQMQIVAVGWQVYQLTRSPFDLGIVGLVQFIPSLFLV 66
           P  L HH  F+LFW ASVASTIALQMQIVAVGWQVYQLT S  DLGIVGLVQFIPSL LV
Sbjct: 17  PPPLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSALDLGIVGLVQFIPSLILV 76

Query: 67  FVVGHVADRHDRRQVARFSILVEAIAAGLLAAGSLGGWLTKEAIFAIVFVIGAGRAFSKP 126
           FVVGHVADR DRR VAR S LVEA+AA  LAAGSLGGWL +E IF IV VIGAGRAFSKP
Sbjct: 77  FVVGHVADRFDRRNVARVSALVEALAAATLAAGSLGGWLNREIIFVIVAVIGAGRAFSKP 136

Query: 127 TMSAMLPTLMQPSLLPRAVAGSASATQVAIIIGPAIGGFLYVAGPSTVYITSCILFVLCS 186
           TMSA+LP+LM P  LP AVAGSASATQ AIIIGPA+GGFLYVAGP+ VY +SC+LF LCS
Sbjct: 137 TMSALLPSLMSPRQLPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYASSCVLFTLCS 196

Query: 187 VLVSMIK------VETPPVKRENATLKSVFAGIAYIRSKPAIFGAISLDLFAVLLGGATA 240
           +L+ +I+            K   A+L SVFAG+A+IRSKPAIFGAISLD+FAVLLGGATA
Sbjct: 197 LLLWLIRRPAQAGAPAAAAKPTGASLSSVFAGLAFIRSKPAIFGAISLDMFAVLLGGATA 256

Query: 241 LLPVYAHDILHTNSVGLGLLRSAPAVGALSVAIFLARNPLRGRIGRTMFIAVGIFGLATI 300
           LLPV+AHDILHT + GLGLLRSAPA GAL+VA++LAR PL GR+GRTMF+AVG+FGLAT+
Sbjct: 257 LLPVFAHDILHTGAAGLGLLRSAPAAGALAVALWLARRPLGGRVGRTMFVAVGVFGLATM 316

Query: 301 VFGLSQSFAVSLLALVVLGASDMISVVVRSTFVQLETPDEMRGRVSAVNSVFIGTSNQLG 360
           VFGLS+SF +SL AL VLGA+DMISVVVRS+FVQLETPD MRGRVSAVNSVFIGTSNQLG
Sbjct: 317 VFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNSVFIGTSNQLG 376

Query: 361 EFESGLTAAWFGAVPAVLIGGIGTLLVVALWIRLFPQLFQVDRLVDN 407
           EFESGLTAAWFGAVPAVLIGG+GTLL+V LW+RLFP L++VDRL   
Sbjct: 377 EFESGLTAAWFGAVPAVLIGGVGTLLIVLLWVRLFPALYRVDRLTSR 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,138,677
Number of extensions: 44061
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 3
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)