BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0033.p (635 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 592 e-170 gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 134 2e-32 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 74 3e-14 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 592 bits (1526), Expect = e-170, Method: Compositional matrix adjust. Identities = 289/348 (83%), Positives = 317/348 (91%), Gaps = 3/348 (0%) Query: 2 PSTRPLEGITVVSLEHAIAAPFCTRQLADMGARVIKVERPGVGDFARGYDERVNGLSSHF 61 PS RPLEGITV+SLEHAIAAPFCTRQLAD+GARVIK+ERPGVGDFARGYD RVNGLSSHF Sbjct: 3 PSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHF 62 Query: 62 VWTNRSKESLTLNLKDAEGKAIIGKLLDQADVLVQNLAPGAAAGLGLSAAVLHKKNPRLI 121 VWTNRSKESLTLNLKD EG+ II +LL QADVLVQNLAPGAAAGLGLSA LH ++PRLI Sbjct: 63 VWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLI 122 Query: 122 VCDISGYGENGPYRDKKAYDLLIQSEAGFLSVTGTAGEQAKAGCSIADIAAGMYAYSHIL 181 VCDISGYGE+GPYRDKKAYDLLIQSEAGFLSVTGT + KAGCSIADIAAGMYAYS+IL Sbjct: 123 VCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSNIL 182 Query: 182 AALIK---RGRDGSGSHIDLSMLESLTEWMSFPMYYAYQGASAPVRSGAEHATIYPYGPF 238 AALIK GR+G GSHIDLSMLESL EWMSFP+YYAYQGASAP+RSGAEHATIYPYGPF Sbjct: 183 AALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPYGPF 242 Query: 239 TAGDGKVVMLGLQNEREWKVFCESVLQDPALAHDARFSTNSRRHENRAELRKLILDMFAP 298 +AGDGK VMLGLQNEREWKVFCE VLQD ALA DARFS+N+RRHE+R LR+LILD+FA Sbjct: 243 SAGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVFAG 302 Query: 299 LTAQEVVARLDQAQIANASVNTMQDLWEHPQLAARERWTEVGSPAGSL 346 L+A++V ARLD+AQIANA VNTMQ+LW+HPQLAAR+RWTEV +P G + Sbjct: 303 LSAEQVAARLDEAQIANARVNTMQELWQHPQLAARQRWTEVATPVGKV 350 Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/296 (77%), Positives = 261/296 (88%), Gaps = 3/296 (1%) Query: 343 AGSLGLSAAVLHKKNPRLIVCDISGYGENGPYRDKKAYDLLIQSEAGFLSVTGTAGEQAK 402 A LGLSA LH ++PRLIVCDISGYGE+GPYRDKKAYDLLIQSEAGFLSVTGT + K Sbjct: 104 AAGLGLSAQALHARHPRLIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVK 163 Query: 403 AGCSIADIAAGMYAYSHILAALIKRGRDGSG---SHIDLSMLESLTEWMSFPMYYAYQGA 459 AGCSIADIAAGMYAYS+ILAALIKRGR+G SHIDLSMLESL EWMSFP+YYAYQGA Sbjct: 164 AGCSIADIAAGMYAYSNILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223 Query: 460 SAPVRSGAEHATIYPYGPFTAGDGKVVMLGLQNEREWKVFCESVLQDPALAHDARFSTNS 519 SAP+RSGAEHATIYPYGPF+AGDGK VMLGLQNEREWKVFCE VLQD ALA DARFS+N+ Sbjct: 224 SAPLRSGAEHATIYPYGPFSAGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNA 283 Query: 520 RRHENRAELRKLILDMFAPLTAQEVVARLDQAQIANASVNTMQDLWEHPQLAARERWTEV 579 RRHE+R LR+LILD+FA L+A++V ARLD+AQIANA VNTMQ+LW+HPQLAAR+RWTEV Sbjct: 284 RRHEHRDVLRQLILDVFAGLSAEQVAARLDEAQIANARVNTMQELWQHPQLAARQRWTEV 343 Query: 580 GSPAGSLPALLPPGVNNTFDFRMDAIPALGQHTDAILAKLGYAQGEIDTLRARGAV 635 +P G + ALLPPG N+++D+RM+AIPALGQHT++IL+ LGY G+I LR RGAV Sbjct: 344 ATPVGKVAALLPPGANDSYDYRMEAIPALGQHTESILSALGYEAGQIAALRERGAV 399 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 165/349 (47%), Gaps = 18/349 (5%) Query: 6 PLEGITVVSLEHAIAAPFCTRQLADMGARVIKVERPGVGDFARGYDERVNGLSSHFVWTN 65 PL GI V+ L IA PFC+R LA+ GA VIKVE PG GD R + +G S + Sbjct: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69 Query: 66 RSKESLTLNLKDAEGKAIIGKLLDQADVLVQNLAPGAAAGLGLSAAVLHKKNPRLIVCDI 125 R+K+S+TLN+KD + I KL +ADV+++N PG L L + NP I+ + Sbjct: 70 RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129 Query: 126 SGYGENGPYRDKKAYDLLIQSEAGFLSVTGTAGE-QAKAGCSIADIAAGMYAYSHILAAL 184 SGYG+ GP RD + + +S G V+G + G SI D A ++ + AL Sbjct: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 Query: 185 I-----------KRGRD---GSGSHIDLSMLESLTEWM-SFPMYYAYQGASAPVRSGAEH 229 K+G D G G +D+++ E++ M S + + G R+G Sbjct: 190 RHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRE-RTGGAL 248 Query: 230 ATIYPYGPFTAGDGKVVMLGLQNEREWKVFCESVLQDPALAHDARFSTNSRRHENRAELR 289 I P +T G+G +++ + +K ++ ++ +A+D + N R E+ Sbjct: 249 PGIVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGRE-DMANDPGLARNDGRVPRTEEID 307 Query: 290 KLILDMFAPLTAQEVVARLDQAQIANASVNTMQDLWEHPQLAARERWTE 338 I + T + +A L A + + +++D+ Q AR+ + + Sbjct: 308 AAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQ 356 Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 34/308 (11%) Query: 353 LHKKNPRLIVCDISGYGENGPYRDKKAYDLLIQSEAGFLSVTGTAGE-QAKAGCSIADIA 411 L + NP I+ +SGYG+ GP RD + + +S G V+G + G SI D Sbjct: 117 LKQLNPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSI 176 Query: 412 AGMYAYSHILAALI-----------KRGRD---GSGSHIDLSMLESLTEWM-SFPMYYAY 456 A ++ + AL K+G D G G +D+++ E++ M S + + Sbjct: 177 AALHGVIGAMMALRHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDF 236 Query: 457 QGASAPVRSGAEHATIYPYGPFTAGDGKVVMLGLQNEREWKVFCESVLQDPALAHDARFS 516 G R+G I P +T G+G +++ + +K ++ ++ +A+D + Sbjct: 237 AGVVRE-RTGGALPGIVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGRE-DMANDPGLA 294 Query: 517 TNSRRHENRAELRKLILDMFAPLTAQEVVARLDQAQIANASVNTMQDLWEHPQLAARERW 576 N R E+ I + T + +A L A + + +++D+ Q AR+ + Sbjct: 295 RNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMF 354 Query: 577 TE----VGSPAGSLPALLP-----PGVNNTFDFRMDAIPALGQHTDAILAKLGYAQGEID 627 + G+P LP + P PG P LG H+D IL LGY + I Sbjct: 355 EQHQFADGTPV-KLPGITPKMSETPGQTKWLG------PELGAHSDEILQSLGYDEAHIK 407 Query: 628 TLRARGAV 635 LR +G V Sbjct: 408 MLRDQGVV 415 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 17/200 (8%) Query: 5 RPLEGITVVSLEHAIAAPFCTRQLADMGARVIKVERPGVGDFARGYDERVNGLSSHFVWT 64 RPL GI V+ L +A P TR LA +GA V++++ G E N + + Sbjct: 206 RPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGW--------EEPNTVPEVVL-- 255 Query: 65 NRSKESLTLNLKDAEGKAIIGKLLDQADVLVQNLAPGAAAGLGLSAAVLHKKNPRLIVCD 124 K LNLKD + +L+ AD+LV A A LGL AA + NP LI Sbjct: 256 --GKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVS 313 Query: 125 ISGYGENGPYRDKKAYDLLIQSEAGF----LSVTGTAGEQAKAGCSIADIAAGMYAYSHI 180 + YG +G ++ ++ +D LIQ G + V G+A +I D A G + Sbjct: 314 LDAYGWSGAWQCRRGFDSLIQMSTGIAEAGMRVMGSAAPVNLPVQAI-DHATGYLMAAAA 372 Query: 181 LAALIKRGRDGSGSHIDLSM 200 L L R G G + S+ Sbjct: 373 LRGLTLRMTRGVGIEVRASL 392 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,991,104 Number of extensions: 84056 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 5 Length of query: 635 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 544 Effective length of database: 1,188,985 Effective search space: 646807840 Effective search space used: 646807840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)