BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0029.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312110|ref|YP_003776202.1| hypothetical protein Hsero_2799...   183   8e-48

>gi|300312110|ref|YP_003776202.1| hypothetical protein Hsero_2799
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  183 bits (465), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 97/117 (82%)

Query: 91  EADWRRHIEPDPVLLFRYSALTFNGHRIHYDRSYVTGIEGYPGLIVHGPLIATLLVDLLG 150
           +A W R I PDPVLLFRYSALTFNGHRIHYDRSYVTG+EGYPGLIVHGPLIATLL DLL 
Sbjct: 169 DALWSRRIVPDPVLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHGPLIATLLADLLA 228

Query: 151 RNLPLARLVEFNFRAVGSLFDIDAFEICGTLSDDGKRAELWAQNLRGELAMQAEAVL 207
           R +P A L  F+FRAVGSLFD +AF +CG  S DG+R  LWAQN RGELAMQAEA L
Sbjct: 229 RQMPQAVLRAFDFRAVGSLFDTEAFTLCGKPSADGRRVALWAQNERGELAMQAEATL 285



 Score =  122 bits (307), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 66/87 (75%)

Query: 1  MSQHDIDLTLLRQWVGKTESRSDFIHPGFAAALAATLDHPQVPAAGDALPPLWHWIYFWT 60
          M+  D+DLTLLRQW+ K+E+R D +HP  A+ALAATLD P+ P AG+ LPPLWHWIYFW 
Sbjct: 1  MASPDLDLTLLRQWLDKSETRHDHLHPAMASALAATLDGPRQPLAGEGLPPLWHWIYFWN 60

Query: 61 ACRQSEVGEDGHPRRGGFXAAPVAPRQ 87
          ACRQSE G DGHP RGGF      PR+
Sbjct: 61 ACRQSETGPDGHPLRGGFLPPVPLPRR 87


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 782,298
Number of extensions: 35929
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)