BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0022.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312112|ref|YP_003776204.1| transmembrane permease [Herbasp...   185   9e-49

>gi|300312112|ref|YP_003776204.1| transmembrane permease
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  185 bits (470), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 106/118 (89%)

Query: 16  LPQKYIFLMGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALW 75
           L +++I  +GL+AGASAGFFSVGGAIVAVP L   FGMTQTAAQGLGLAMVTPGTLVALW
Sbjct: 137 LGRRWIPFVGLSAGASAGFFSVGGAIVAVPLLTAFFGMTQTAAQGLGLAMVTPGTLVALW 196

Query: 76  TYASAGHVDWSVGIPLALGGVLSISWGVALAHHLPERRLRMLFCGALIAIAAWMMTHG 133
           TYA AGHVDW+VGIP+ALGGVLSISWGVALAHHLPERRLR+LFCGAL+ ++ WMM  G
Sbjct: 197 TYAHAGHVDWAVGIPMALGGVLSISWGVALAHHLPERRLRILFCGALLLLSVWMMVGG 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 435,830
Number of extensions: 16946
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)