BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0020.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312112|ref|YP_003776204.1| transmembrane permease [Herbasp...   343   1e-95

>gi|300312112|ref|YP_003776204.1| transmembrane permease
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  343 bits (879), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/254 (76%), Positives = 218/254 (85%)

Query: 1   MMHSLYFTVVVNFFLGGVLGAIGGLFGIGGGLIAIPVLGFLYGMDQQLAQGTALVMIVPN 60
           M  SL+F+ VVNF LGG+LGA+GGLFGIGGGLIAIPVLG+LYGMDQQLAQGT+LVMIVPN
Sbjct: 1   MTASLFFSGVVNFLLGGLLGAMGGLFGIGGGLIAIPVLGYLYGMDQQLAQGTSLVMIVPN 60

Query: 61  VVIGFWRYKQRNKIELGSALQMAVPAVFTTYFAARFATSIEARSLHLAFALFMVVLALYY 120
           VVI FWRYKQRNKIE  +A  M  PAV  TYF+AR AT+I+ARSLH  FA+FM VLALYY
Sbjct: 61  VVIAFWRYKQRNKIEWSTAAMMCAPAVVATYFSARLATAIDARSLHFCFAVFMAVLALYY 120

Query: 121 LWTLLRRQKEMIPRARLPQKYIFLMGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQ 180
           LWTLLRR   ++    L +++I  +GL+AGASAGFFSVGGAIVAVP L   FGMTQTAAQ
Sbjct: 121 LWTLLRRSPAVVRPVVLGRRWIPFVGLSAGASAGFFSVGGAIVAVPLLTAFFGMTQTAAQ 180

Query: 181 GLGLAMVTPGTLVALWTYASAGHVDWSVGIPLALGGVLSISWGVALAHHLPERRLRMLFC 240
           GLGLAMVTPGTLVALWTYA AGHVDW+VGIP+ALGGVLSISWGVALAHHLPERRLR+LFC
Sbjct: 181 GLGLAMVTPGTLVALWTYAHAGHVDWAVGIPMALGGVLSISWGVALAHHLPERRLRILFC 240

Query: 241 GALIAIAAWMMTHG 254
           GAL+ ++ WMM  G
Sbjct: 241 GALLLLSVWMMVGG 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 649,581
Number of extensions: 23727
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)