BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0019.p (213 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312114|ref|YP_003776206.1| 3-oxoacyl-[acyl-carrier-protein... 179 1e-46 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 79 3e-16 gi|300313172|ref|YP_003777264.1| short-chain alcohol dehydrogena... 60 1e-10 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 59 2e-10 gi|300313237|ref|YP_003777329.1| dehydrogenase [Herbaspirillum s... 56 2e-09 >gi|300312114|ref|YP_003776206.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 262 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/143 (63%), Positives = 110/143 (76%), Gaps = 4/143 (2%) Query: 25 DILVNNAGGPPLGDFRDWDREIWLKAIDANMLTPVELIKATVDQMIKRGWGRVINITSSS 84 DILV NAGGP GDFRDW RE W+ A+DANMLTP+ELIKATVD MI R +GR++NITSS+ Sbjct: 86 DILVTNAGGPKPGDFRDWSREDWIAAVDANMLTPIELIKATVDGMIARRFGRIVNITSSA 145 Query: 85 VKAPRYDLGLSNGARSGLTGFVAGVSRHIAKSGVTINNLLPGSFETDRLRSSFVGSAKLT 144 V+AP LGLSNGARSGLTGFVAG++R VTINNLLPG FETDRLR++ G+A+ + Sbjct: 146 VRAPIDILGLSNGARSGLTGFVAGLARKTVAHNVTINNLLPGPFETDRLRATASGAAQES 205 Query: 145 GETPDEVRLQRMAETPRRNPRRR 167 G + DE+ +AE + NP R Sbjct: 206 GRSVDEI----LAERRKLNPAGR 224 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 4/113 (3%) Query: 25 DILVNNAGGPPLGDFRDWDREIWLKAIDANMLTPVELIKATVDQMIKRGWGRVINITSSS 84 D+LVNNAG G FR ++ W ID N+ + + K ++ M +RG+GR+INI SS Sbjct: 83 DVLVNNAGITRDGQFRKMSKDDWDAVIDTNLNSLFNVTKQVIEGMCERGFGRIINI--SS 140 Query: 85 VKAPRYDLGLSN--GARSGLTGFVAGVSRHIAKSGVTINNLLPGSFETDRLRS 135 V + G +N A++G+ GF +++ +A GVT+N + PG TD +R+ Sbjct: 141 VNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSPGYIGTDMVRA 193 >gi|300313172|ref|YP_003777264.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 254 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 25 DILVNNAGGPPLGDFRDWDREIWLKAIDANMLTPVELIKATVDQMIKRGWGRVINITS-- 82 D+L N AG G+ + D + W + + N I+A + M+ + G ++NI S Sbjct: 80 DVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFHTIRAVLPGMLAKKAGSIVNIASAA 139 Query: 83 SSVK--APRYDLGLSNGARSGLTGFVAGVSRHIAKSGVTINNLLPGSFETDRLRSSFVGS 140 SSVK A R+ G S A GLT VA G+ N + PG+ E+ L Sbjct: 140 SSVKGVANRFAYGASKAAVVGLTKSVAA---DFVAQGIRCNAICPGTIESPSLNQRISTQ 196 Query: 141 AKLTGETPDEVRLQRMAETP 160 AK TG++ +EVR + P Sbjct: 197 AKETGKSEEEVRAAFVGRQP 216 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 6/109 (5%) Query: 25 DILVNNAGGPPLGDFRDWDREIWLKAIDANMLTPVELIKATVDQMIKRGWGRVINITSSS 84 D+LVNNAG F D+ E WL+ ++ N+ + + M+K+ WGR++NI+S S Sbjct: 87 DVLVNNAGVARTYSFLDYPLENWLQTMNVNVTGVLLAGQHAARLMVKQQWGRIVNISSIS 146 Query: 85 ---VKAPRYDLGLSNGARSGLTGFVAGVSRHIAKSGVTINNLLPGSFET 130 A R G S A GLT +A +A+ G+T+N++ PG +T Sbjct: 147 GIRAGAGRTAYGTSKAAVIGLTRQMA---IELAQYGITVNSVAPGPVDT 192 >gi|300313237|ref|YP_003777329.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 25 DILVNNA---GGPPLGDFRDWDREIWLKAIDANMLTPVELIKATVDQMIKRGWGRVINIT 81 DILVN A GG + + E L+ I+ ++ + KA M G+GR+INI Sbjct: 87 DILVNGAAHPGGLVRSEIQHASPEGLLEDINIKVVGYMRFAKAVAPHMRAGGYGRIINIG 146 Query: 82 SSSVKAPRYDLGLSNGARSGLTGFVAGVSRHIAKSGVTINNLLPGSFETDRLRSSFVGSA 141 + + + G+ N A LT + S + G+T+N + PG ET + + A Sbjct: 147 GLTGRGSKQLSGMRNVAICHLTKTL---SDQLGPDGITVNVIHPGVVETPHIHELYEKEA 203 Query: 142 KLTGETPDEVRLQRMAETPRR 162 KL G TP++V TP R Sbjct: 204 KLQGLTPEQVEQNYAKATPIR 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 683,659 Number of extensions: 27182 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 6 Length of query: 213 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 132 Effective length of database: 1,236,335 Effective search space: 163196220 Effective search space used: 163196220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)