BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0018.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312317|ref|YP_003776409.1| glutathione S-transferase [Herb...   108   2e-25
gi|300311872|ref|YP_003775964.1| glutathione S-transferase famil...    60   1e-10

>gi|300312317|ref|YP_003776409.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  108 bits (269), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 6   GRFFGQP-KDRGEVLSWLMFIATGLGPFSGQAVHFQHAAPAGLDYAVNRYRREIDRHYQV 64
           GRF G+  +++ EVL W+MF   GLGP  GQA HF+  AP  ++YAVNRY  E  R YQV
Sbjct: 83  GRFLGETTREKYEVLQWVMFQMGGLGPMLGQAHHFRLYAPEQIEYAVNRYTNEARRLYQV 142

Query: 65  LNQRLEGRTYIVGDECTVADISAWGWVDRAGHVFKKPEDPLGDYPNVKRWFQAMDARPAT 124
           ++++L    Y+ G+  T+ADI+ + W        K     L D+PNVKRW+ A+ ARPA 
Sbjct: 143 MDKQLGQHAYLAGEHYTIADIACFPWT----RSHKNQGIDLDDFPNVKRWYDAISARPAV 198

Query: 125 ARARKVGAXAR 135
            R   V A  R
Sbjct: 199 QRGVTVLADKR 209


>gi|300311872|ref|YP_003775964.1| glutathione S-transferase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score = 59.7 bits (143), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 15  RGEVLSWLMFIATGLGPFSGQAVHFQHAAPAGLDYAV----NRYRREIDRHYQVLNQRLE 70
           R +V+ W+MF   G+GP  GQ   F   A  G +Y      +RY  E  R   V+++RL 
Sbjct: 113 RYQVIQWVMFQMGGVGPMFGQLGFFHRFA--GKEYEDKRPRDRYVNESKRLLGVMDKRLA 170

Query: 71  GRTYIVGDECTVADISAWGWVDRAGHVFKKPEDPLG--DYPNVKRWFQAMDARPATARAR 128
              ++ GD  ++ADI+ + W+ R    F +  D +G  D+P+V R  +A  ARPA  R  
Sbjct: 171 QSQWLGGDAYSIADIATFPWI-RNLIGFYEAADLVGFQDFPHVARALEAFVARPAVVRGL 229

Query: 129 KVGA 132
            + A
Sbjct: 230 NIPA 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 492,475
Number of extensions: 20425
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)