BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0016.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311759|ref|YP_003775851.1| short-chain alcohol dehydrogena...    65   2e-12
gi|300311727|ref|YP_003775819.1| dehydrogenase [Herbaspirillum s...    59   2e-10
gi|300311869|ref|YP_003775961.1| short-chain alcohol dehydrogena...    55   2e-09
gi|300313913|ref|YP_003778005.1| short-chain dehydrogenase [Herb...    55   2e-09
gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein...    54   5e-09

>gi|300311759|ref|YP_003775851.1| short-chain alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query: 1   MIEVNLIAPILLTRDVMPDLRASGDGMVVNVASGIALVGVPFYATYAAAKAGISHFGEAL 60
           + E N +  I +T+  +P +RA G G+V+NV S + L  +P  A Y A+KA I+ F E+L
Sbjct: 95  LFETNTLGSIAMTQAFIPQMRARGQGLVINVTSSVTLRALPLLAVYTASKAAINAFTESL 154

Query: 61  RRELKGEGVHVLTVYPG 77
             EL   GV V  V PG
Sbjct: 155 ALELAPLGVQVRLVLPG 171


>gi|300311727|ref|YP_003775819.1| dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 247

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 50/111 (45%)

Query: 1   MIEVNLIAPILLTRDVMPDLRASGDGMVVNVASGIALVGVPFYATYAAAKAGISHFGEAL 60
           + E N    + + + V+P  R  GDG+++NV S   L   P  A Y A+K  I  F  +L
Sbjct: 95  IFETNTFGVMAMCQAVIPQFRERGDGVIINVTSSATLAAFPLVAAYTASKTAIEGFTASL 154

Query: 61  RRELKGEGVHVLTVYPGATETPMMASSKAGPDLGFVRESAQAVAQAAVQGI 111
             ELK  GV V  V PG   +   A++      G + E  ++ A     G 
Sbjct: 155 AHELKAVGVRVKLVEPGYGPSTSFATNGQQRMQGLITEPYESFAHEVFAGF 205


>gi|300311869|ref|YP_003775961.1| short-chain alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 1   MIEVNLIAPILLTRDVMPDLRASGDGMVVNVASGIALVGVPFYATYAAAKAGISHFGEAL 60
           + +V+L  P  LT+ ++P L A G G ++N++SG+A   +P YA YA+ K G+      +
Sbjct: 119 LFKVHLKGPFFLTQALLP-LLAQG-GRIINISSGLARFSLPGYAAYASMKGGVEVMTRYM 176

Query: 61  RRELKGEGVHVLTVYPGATET 81
            +E    G+ V TV PGA ET
Sbjct: 177 AKEFGARGIVVNTVAPGAIET 197


>gi|300313913|ref|YP_003778005.1| short-chain dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%)

Query: 1   MIEVNLIAPILLTRDVMPDLRASGDGMVVNVASGIALVGVPFYATYAAAKAGISHFGEAL 60
           MI +N+ AP  LT   +P   A G G V+N++S + +        Y  +KA +  F ++L
Sbjct: 114 MIALNVTAPTRLTYAAVPGFVARGQGAVINISSIVGVAPEVLNGVYGGSKAFVLAFSQSL 173

Query: 61  RRELKGEGVHVLTVYPGATETPMMA 85
             EL  +GV V  V PGAT T   A
Sbjct: 174 HHELAAQGVQVQAVLPGATATDFWA 198


>gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein)
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 53.9 bits (128), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 1   MIEVNLIAPILLTRDVMPDLRASGDGMVVNVASGIALVGVPFYATYAAAKAGISHFGEAL 60
           +++VNL+      R V P +RA+  G +VN+AS     G P  + Y+AAKAG+    ++L
Sbjct: 106 IVQVNLLGVFHACRSVTPAMRAARRGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSL 165

Query: 61  RRELKGEGVHVLTVYPGATETPMM 84
            +EL   GV V  + P A +T ++
Sbjct: 166 GKELAESGVLVNAIAPAAVKTALL 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 477,086
Number of extensions: 18461
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 6
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)