BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0228.0033.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [...   174   2e-45
gi|300314042|ref|YP_003778134.1| signal transduction protein con...    54   3e-09

>gi|300311871|ref|YP_003775963.1| EAL domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1036

 Score =  174 bits (440), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/111 (70%), Positives = 94/111 (84%)

Query: 1   VAFDSLEGMMVTDADGKILRVNQAFTKITGYDVEDVIGKTPRLLRSDRHSPAFHRAIWES 60
           VAFDS EGM++TDA+ KILRVN+AFT+ITGY  E+++GK P LLRSDRH PAF + + ES
Sbjct: 479 VAFDSREGMLITDANSKILRVNKAFTEITGYSAEEIVGKHPNLLRSDRHGPAFFQEMRES 538

Query: 61  VRHSGGWQGEIWNRRKNGQVYPEWLTISAVKSDDGVVTHYVGTHHDITERK 111
           +R  G WQGEIW+RRKNG+VYPEWLTISAVK+ D  VTHYV THHDI++RK
Sbjct: 539 IRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDQQVTHYVSTHHDISDRK 589


>gi|300314042|ref|YP_003778134.1| signal transduction protein
           containing a membrane domain, an EAL and a GGDEF
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 948

 Score = 54.3 bits (129), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 47/100 (47%)

Query: 13  DADGKILRVNQAFTKITGYDVEDVIGKTPRLLRSDRHSPAFHRAIWESVRHSGGWQGEIW 72
           + D  I  VN AF +ITGY   + +GK+ R L      P     +W ++R        + 
Sbjct: 411 EPDYTIEYVNPAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLR 470

Query: 73  NRRKNGQVYPEWLTISAVKSDDGVVTHYVGTHHDITERKK 112
           N  K+G        I+ V+ + G VTH+V   +DIT  K+
Sbjct: 471 NYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKR 510


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 407,927
Number of extensions: 15955
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)