BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0228.0024.p
         (102 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311759|ref|YP_003775851.1| short-chain alcohol dehydrogena...   100   4e-23
gi|300311727|ref|YP_003775819.1| dehydrogenase [Herbaspirillum s...    85   1e-18

>gi|300311759|ref|YP_003775851.1| short-chain alcohol
          dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score = 99.8 bits (247), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 50/62 (80%)

Query: 10 MKTVLITGCSSGFGLETAQYFLDRDWNIIATMRTPREDLLPRSERLRILALDVTDADSIR 69
          MKT+ ITGCSSGFGLE A+YFL RDW +IATMRTPR DLLP S  LRIL LDV DA SI+
Sbjct: 1  MKTIFITGCSSGFGLEIARYFLQRDWKVIATMRTPRHDLLPASPHLRILPLDVADAHSIQ 60

Query: 70 RA 71
           A
Sbjct: 61 AA 62


>gi|300311727|ref|YP_003775819.1| dehydrogenase [Herbaspirillum
          seropedicae SmR1]
          Length = 247

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 49/62 (79%)

Query: 10 MKTVLITGCSSGFGLETAQYFLDRDWNIIATMRTPREDLLPRSERLRILALDVTDADSIR 69
          M TVLITGCSSG+GLETA++FL   W +IATMR+PR DLL  S+ L IL LDV+  DSI+
Sbjct: 1  MNTVLITGCSSGYGLETARHFLANGWKVIATMRSPRFDLLSPSDNLCILPLDVSQPDSIK 60

Query: 70 RA 71
          +A
Sbjct: 61 QA 62


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 323,770
Number of extensions: 11604
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 31
Effective length of database: 1,283,685
Effective search space: 39794235
Effective search space used: 39794235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)