BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0228.0021.p
         (78 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310479|ref|YP_003774571.1| hypothetical protein Hsero_1146...    87   3e-19

>gi|300310479|ref|YP_003774571.1| hypothetical protein Hsero_1146
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score = 86.7 bits (213), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 57/78 (73%), Gaps = 4/78 (5%)

Query: 1   MNGGNGAGLAHQNGLSAPVENVENTTVNNYYGDNTDKGRAQDRDDSGSEAASSSDLADLS 60
            NG  G+G AHQNGLSAPVEN+ENTTVNNYYG + D+   Q   D G++  SS+DLADL 
Sbjct: 170 FNGNGGSGFAHQNGLSAPVENIENTTVNNYYGSDADRSSDQASSD-GNDFGSSNDLADLG 228

Query: 61  NIDLDDSSDSGSYDDSMA 78
           N+DLD   DSG YDDS+ 
Sbjct: 229 NVDLD---DSGGYDDSLV 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.299    0.121    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 127,535
Number of extensions: 2835
Number of successful extensions: 3
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 78
Length of database: 1,619,870
Length adjustment: 49
Effective length of query: 29
Effective length of database: 1,387,855
Effective search space: 40247795
Effective search space used: 40247795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 123 (52.0 bits)