BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0228.0006.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311582|ref|YP_003775674.1| intracellular protease/amidase ...   235   2e-63
gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa...    60   1e-10
gi|300312374|ref|YP_003776466.1| intracellular protease/amidase ...    60   1e-10

>gi|300311582|ref|YP_003775674.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  235 bits (600), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 145/201 (72%), Gaps = 31/201 (15%)

Query: 11  LCVAILATDGFEQAELLEPKKALEAAGXELLEPKKALEAAAGACFVTKQGHVVSQSSVRF 70
           L VA+L TDGFEQAELLEPKKALE               AAGA       H++S  S   
Sbjct: 8   LKVAVLVTDGFEQAELLEPKKALE---------------AAGATV-----HILSDKS--- 44

Query: 71  YASDSEQDGMLEGFKHVDKGEQVKVDKTFEQARQEDYAAVLLPGGVVNGDAMRLVPEARR 130
              DS     ++GFKHVDKGE V VD + + A  +DY+AVLLPGGVVNGDAMRL+P+AR 
Sbjct: 45  ---DS-----VQGFKHVDKGEVVSVDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARN 96

Query: 131 FVQQADAAHKPIAAICHGGWLLISAGLAKDRTVTSWPSLQDDFRNAGGKWVDREVVQDDN 190
           FV+ A+ A KPIA+ICHGGWLLISAG+AK RTVTSWPSLQDDF+NAG +WVD+EVV+D+N
Sbjct: 97  FVRAANDAEKPIASICHGGWLLISAGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDEN 156

Query: 191 FITSRKPDDIPAFNKTLLAAL 211
           F++SRKP DIPAFN   +  L
Sbjct: 157 FVSSRKPADIPAFNNEFMKLL 177


>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 1176

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 52  GACFVTKQGHVVSQSSVRFYASDSEQDGMLEGFKHVDKGEQVKVDKTFEQARQEDYAAVL 111
           G  FVT+QGHVVS SSVRFYASDSEQDGML          Q +++   +Q R +   A  
Sbjct: 633 GGLFVTRQGHVVSNSSVRFYASDSEQDGML--------ARQQEIENITKQQRAQAMLAEE 684

Query: 112 LPGGVVNGDAMRLVPEAR 129
             G  V  +A  L    R
Sbjct: 685 AKGRAVRAEAALLAASQR 702


>gi|300312374|ref|YP_003776466.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 90  GEQVKVDKTFEQARQEDYAAVLLPGGVVNGDAMRLVPEARRFVQQADAAHKPIAAICHGG 149
           G Q  ++ +F+      Y A+++ GG    + +RL P+    VQ    A KPIAA+CHG 
Sbjct: 66  GHQFALNASFDDVSAAGYDALVVAGGRAP-EYLRLNPKVIELVQAFAKADKPIAAVCHGP 124

Query: 150 WLLISAGLAKDRTVTSWPSLQDDFRNAGGKWVDREV---VQDDNFITSRKPDDIPAFNKT 206
            +L +AG+ + + V+++P+   + + AGG++ D  V   + D   +T+      PA+   
Sbjct: 125 QVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWLAQ 184

Query: 207 LLAAL 211
            L  L
Sbjct: 185 FLQVL 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 573,944
Number of extensions: 21589
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)