BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0006.p
         (98 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t...   105   7e-25
gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t...    62   1e-11
gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t...    59   9e-11
gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t...    55   1e-09

>gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 394

 Score =  105 bits (262), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 67/87 (77%)

Query: 1   MPRXSSFEKNYMQKFDSNIELFAPFAYDATQVLIAAMRQANSTEPKKIAQALHEIRFNGM 60
           MP   SF + Y + FDS+++L+A FAY+A Q +I  +RQA S +P++IA+A+H +RF G+
Sbjct: 296 MPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIRQAGSADPERIAEAMHRLRFEGV 355

Query: 61  TGMISFNQDGDLNNPTFTIYEVENQSW 87
           +G ++FN++GDL  P+FT+YEV++Q W
Sbjct: 356 SGPVAFNEEGDLLQPSFTMYEVKDQRW 382


>gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 52/97 (53%)

Query: 2   PRXSSFEKNYMQKFDSNIELFAPFAYDATQVLIAAMRQANSTEPKKIAQALHEIRFNGMT 61
           P+     + Y ++F +    ++ +AYDA  VL AA+ QA S    KIA ALH +R  G+ 
Sbjct: 282 PQWKVVTQTYQRRFGAAPTTYSFYAYDAASVLTAAIVQAGSDNGDKIATALHRMRHAGLH 341

Query: 62  GMISFNQDGDLNNPTFTIYEVENQSWVVKKVITGSAN 98
           G +SF+  G   +P +T+   + +   V+    GSAN
Sbjct: 342 GTLSFDATGANAHPRYTLLRYQERWQAVEVFAPGSAN 378


>gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 380

 Score = 58.5 bits (140), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 7   FEKNYMQKFDSNIELFAPFAYDATQVLIAAMRQANSTEPKKIAQALHEIRFNGMTGMISF 66
           F   Y +KF  ++   A +AYDAT  +  AM +A S +PKK    L +I   G+TG+I+F
Sbjct: 293 FRAAYKKKFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAF 352

Query: 67  NQDGDLNNPTFTIY 80
           +  GD+ + + T+Y
Sbjct: 353 DAKGDIKDGSLTLY 366


>gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 378

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 7   FEKNYMQKFDSNIELFAPFAYDATQVLIAAMRQANSTEPKKIAQALHEIRFNGMTGMISF 66
           F   Y +K++   E +A   YD   ++  AM+QANS +PK+   AL +I + G+ G   F
Sbjct: 292 FSDEYQKKYNRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDF 351

Query: 67  NQDGDLNNPTFTIYEVEN 84
           + + DL     T+Y  ++
Sbjct: 352 DANHDLKQSPVTVYRFKD 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 265,175
Number of extensions: 8128
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 1,619,870
Length adjustment: 67
Effective length of query: 31
Effective length of database: 1,302,625
Effective search space: 40381375
Effective search space used: 40381375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)