BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0005.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310949|ref|YP_003775041.1| endonuclease III protein [Herba...   388   e-109
gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylas...    57   1e-09

>gi|300310949|ref|YP_003775041.1| endonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  388 bits (997), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 196/208 (94%)

Query: 1   MNSEKRREIFNRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKAMRKLYPVANT 60
           MN  KRREIF RLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKA RKLYPVANT
Sbjct: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60

Query: 61  PAKIYKLGVDGLIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPQTREELEALPGVGRK 120
           P  IY++GVD L+PYIQTIGL+RTKAKNVIETCRIL+E+HGG+VP++RE LEALPGVGRK
Sbjct: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRK 120

Query: 121 TANVVLNTAFGHATIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFIAPEFLQDAHHWLI 180
           TANVVLNTAFGH TIAVDTHIFRVSNRTG+APGKDVDEVERKL+KF+APEF QDAHHWLI
Sbjct: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180

Query: 181 LHGRYTCIARKPQCWNCLIADLCEFHXR 208
           LHGRYTCIARKPQCWNC+IADLCEF  +
Sbjct: 181 LHGRYTCIARKPQCWNCIIADLCEFKQK 208


>gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 82  FRTKAKNVIETCRILLEQHGGEVPQTREELEALPGVGRKTANVVLNTAFGHATIAVDTHI 141
           + T+A+N+ +  + ++EQ+GG  P   + L  LPG+GR TA  +   ++G     +D ++
Sbjct: 101 YYTRARNLHKCAQRVVEQYGGRFPDDPDLLADLPGIGRSTAAAIAAFSYGRRAAILDGNV 160

Query: 142 FRVSNRT-GIAPGKDVDEVERKL----MKFIAPEFLQDAHHWLILHGRYTCIARKPQCWN 196
            RV  R  GI        +E KL    +  +  + ++     L+  G   C+  KP C  
Sbjct: 161 KRVFARVFGIDGYPGAKPIEDKLWLRAVALLPDQDIESYTQGLMDLGATLCVRGKPACER 220

Query: 197 CLIADLC 203
           C +A  C
Sbjct: 221 CPLAGRC 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,913
Number of extensions: 21656
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)