BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0004.p
         (411 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310949|ref|YP_003775041.1| endonuclease III protein [Herba...   394   e-111
gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protei...   281   5e-77
gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylas...    57   2e-09

>gi|300310949|ref|YP_003775041.1| endonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/209 (88%), Positives = 199/209 (95%)

Query: 186 MNSEKRREIFNRLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKAMRKLYPVANT 245
           MN  KRREIF RLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKA RKLYPVANT
Sbjct: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60

Query: 246 PAKIYKLGVDGLIPYIQTIGLFRTKAKNVIETCRILLEQHGGEVPQTREELEALPGVGRK 305
           P  IY++GVD L+PYIQTIGL+RTKAKNVIETCRIL+E+HGG+VP++RE LEALPGVGRK
Sbjct: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRK 120

Query: 306 TANVVLNTAFGHATIAVDTHIFRVSNRTGIAPGKDVDEVERKLMKFIAPEFLQDAHHWLI 365
           TANVVLNTAFGH TIAVDTHIFRVSNRTG+APGKDVDEVERKL+KF+APEF QDAHHWLI
Sbjct: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180

Query: 366 LHGRYTCIARKPQCWNCLIADLCEFRQKT 394
           LHGRYTCIARKPQCWNC+IADLCEF+QKT
Sbjct: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKT 209


>gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  281 bits (720), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 149/169 (88%), Gaps = 2/169 (1%)

Query: 1   VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAVADGSAGYNQCPPGGAEGVARLAQ 60
           ++SSA  +LAD++E+LLPQTQC KCGYPACRPYAEA+A+G A YNQCPPGG EGVARLAQ
Sbjct: 6   ITSSA--SLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQ 63

Query: 61  LLAKPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVLPDLCT 120
           LL +P++PLNP +G E+PR  AVIDEA CIGCTLCIQACPVDAI GAAKQMHTV+  LCT
Sbjct: 64  LLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCT 123

Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRNFRLR 169
           GCDLCVAPCPVDCI+MVEVTPG TGWQAW QEQADAARARH +R  RLR
Sbjct: 124 GCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLR 172


>gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 267 FRTKAKNVIETCRILLEQHGGEVPQTREELEALPGVGRKTANVVLNTAFGHATIAVDTHI 326
           + T+A+N+ +  + ++EQ+GG  P   + L  LPG+GR TA  +   ++G     +D ++
Sbjct: 101 YYTRARNLHKCAQRVVEQYGGRFPDDPDLLADLPGIGRSTAAAIAAFSYGRRAAILDGNV 160

Query: 327 FRVSNRT-GIAPGKDVDEVERKL-MKFIAPEFLQDAHHW---LILHGRYTCIARKPQCWN 381
            RV  R  GI        +E KL ++ +A    QD   +   L+  G   C+  KP C  
Sbjct: 161 KRVFARVFGIDGYPGAKPIEDKLWLRAVALLPDQDIESYTQGLMDLGATLCVRGKPACER 220

Query: 382 CLIADLCEFRQKTQQALANDQPTPKPIRQP 411
           C +A  C        ALA D+    P+ +P
Sbjct: 221 CPLAGRC-------VALAQDRVAELPVSKP 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,186,189
Number of extensions: 44232
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 323
Effective length of database: 1,203,190
Effective search space: 388630370
Effective search space used: 388630370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)