BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0227.0001.p
         (103 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310955|ref|YP_003775047.1| ferredoxin protein [Herbaspiril...   188   7e-50
gi|300311230|ref|YP_003775322.1| ferredoxin protein [Herbaspiril...   130   2e-32

>gi|300310955|ref|YP_003775047.1| ferredoxin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 107

 Score =  188 bits (478), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/103 (86%), Positives = 97/103 (94%)

Query: 1   VTDSCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 60
           VTDSC+RCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD
Sbjct: 5   VTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 64

Query: 61  QQEFIKLNEQLARFWPSITKTKAPLAEAEEWKDAKNKLEFLQR 103
           QQ++I LN +L+R WPSITKTKAPL EAEEWKD  +KL++LQR
Sbjct: 65  QQQYIALNAELSRSWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107


>gi|300311230|ref|YP_003775322.1| ferredoxin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 112

 Score =  130 bits (328), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   VTDSCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPAD 60
           VTDSCI+C+YTDCV VCP+DCF EGPNFL IDPD CIDC++CV ECPV AIY   D+PA 
Sbjct: 5   VTDSCIQCKYTDCVSVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATDLPAT 64

Query: 61  QQEFIKLNEQLAR--FWPSITKTKAPLAEAEEWKDAKNKLEFLQR 103
              F +LN +L+R   W  IT+ K PL   E+WKD  +KL  L++
Sbjct: 65  LAHFEQLNARLSRQPGWKPITQAKPPLPGHEKWKDVADKLPLLEQ 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 283,195
Number of extensions: 9223
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 32
Effective length of database: 1,283,685
Effective search space: 41077920
Effective search space used: 41077920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)