BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0226.0014.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310368|ref|YP_003774460.1| sugar ABC transporter permease ... 276 1e-75 gi|300310064|ref|YP_003774156.1| sugar ABC transporter permease ... 73 3e-14 gi|300310397|ref|YP_003774489.1| ribose/xylose/arabinose/galacto... 67 2e-12 gi|300313726|ref|YP_003777818.1| sugar ABC transporter permease ... 66 3e-12 >gi|300310368|ref|YP_003774460.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 359 Score = 276 bits (707), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 143/171 (83%), Positives = 158/171 (92%) Query: 1 MLAALGMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAA 60 MLAALGMTLVIATRG+DISVGAVVAISG +AA+LIGG MVV +GV +YVSN+PM WAL A Sbjct: 76 MLAALGMTLVIATRGVDISVGAVVAISGAVAAILIGGKMVVVDGVSQYVSNVPMVWALCA 135 Query: 61 ALGVALLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSG 120 A+G ALLCGAWNGLLVA LGLQPIIATLILMVAGRGLAQLLTDGQI+TVYYKPFF+LG G Sbjct: 136 AMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFFLGGG 195 Query: 121 YLWGLPFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGIXPSA 171 YL+GLPFSL+I A MFV+LALLM+KTALGLFI+SVGINPVASRLAGI +A Sbjct: 196 YLFGLPFSLYIAAAMFVLLALLMKKTALGLFIESVGINPVASRLAGIRTAA 246 >gi|300310064|ref|YP_003774156.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 344 Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 15/168 (8%) Query: 1 MLAALGMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAA 60 ++ A GMT VI T GID+SVG+V+A+S + G V P GWA+ Sbjct: 77 LVLAAGMTFVILTAGIDLSVGSVLAVSAVL------GMQVSLGAAP--------GWAIPM 122 Query: 61 ALGVALLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFF-YLGS 119 + L+ G NG +VA L + + TL M A RG A LL DG + P F ++G+ Sbjct: 123 FIFSGLVMGMVNGAMVALLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGN 182 Query: 120 GYLWGLPFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGI 167 G +P+ +++ + ++ +++RKT LG+ I ++G N A+RL GI Sbjct: 183 GDFLHVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGI 230 >gi|300310397|ref|YP_003774489.1| ribose/xylose/arabinose/galactoside ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 328 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 12/167 (7%) Query: 4 ALGMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAAALG 63 A+GM+ VI T GID+SVGA +A++GTI+A LI VN+G+P P+ AL +G Sbjct: 70 AVGMSFVILTGGIDLSVGAAMALAGTISAGLI-----VNSGLPA-----PL--ALLCGVG 117 Query: 64 VALLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSGYLW 123 +A G NG LVA + II TL M RG+ + + G I+ + G G + Sbjct: 118 LATCIGLLNGALVAWGRMPAIIVTLATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIG 177 Query: 124 GLPFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGIXPS 170 +P + ++ ++ + LL+++TA G + ++G N +A+RL+G+ + Sbjct: 178 MVPVPVILMLIVYALAWLLLQRTAFGRHVYAIGGNEMAARLSGVKTT 224 >gi|300313726|ref|YP_003777818.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 342 Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 20/170 (11%) Query: 2 LAALGMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAA- 60 + AL M L+I R IDISV A++A++ + + GVP P+G L A Sbjct: 75 MIALPMALLIICREIDISVSAIIALAS------VAMGLANQAGVP------PLGLLLVAI 122 Query: 61 ALGVALLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSG 120 A G A CG NG LV LGL I+ T+ M RGLA ++ Q T Y + G G Sbjct: 123 ATGTA--CGLLNGALVTRLGLPSIVVTIGSMSLFRGLASVVLGDQAFTQYPEVLGDWGQG 180 Query: 121 YLWGL---PFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGI 167 Y + + PF ++++A VV A+L+ T G + ++G NPVA+R +G+ Sbjct: 181 YFFDVLPRPFVVWLLAA--VVFAVLLHVTRWGRRLYAIGNNPVAARFSGV 228 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,010,922 Number of extensions: 43994 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 11 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)