BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0226.0013.p (186 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310369|ref|YP_003774461.1| sugar ABC transporter permease ... 261 2e-71 gi|300310397|ref|YP_003774489.1| ribose/xylose/arabinose/galacto... 97 6e-22 gi|300311740|ref|YP_003775832.1| sugar ABC transporter permease ... 87 1e-18 gi|300310064|ref|YP_003774156.1| sugar ABC transporter permease ... 84 5e-18 gi|300310383|ref|YP_003774475.1| sugar ABC transporter permease ... 66 2e-12 >gi|300310369|ref|YP_003774461.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 340 Score = 261 bits (668), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/178 (82%), Positives = 157/178 (88%) Query: 1 MSQTRLEFGDAFISPSVAIALLMLALAIYLAHYTRFGRAVYAVGGNEQSALLMGLPVGRT 60 +SQTRLE FISPSV IAL MLALAI++AH TRFGRAVYA+GGNE SALLMGLPVGRT Sbjct: 159 LSQTRLELAGLFISPSVVIALFMLALAIWMAHCTRFGRAVYAIGGNENSALLMGLPVGRT 218 Query: 61 KVAIYAFSGFCAALAGVLFSFYMLSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTL 120 KV +YAFSG CAA+AGVLFSFYMLSGYGLHAQG ELDAIAAVVIGGTLLTGGYGYVAGTL Sbjct: 219 KVLVYAFSGLCAAVAGVLFSFYMLSGYGLHAQGVELDAIAAVVIGGTLLTGGYGYVAGTL 278 Query: 121 TGVLILGVIQTLIAFDGTLSSWWTKIVIGVLLFVFCLAQRLMSMGAAKAADANGAAVA 178 TGVLILGVIQTLIAFDGTLSSWWTKI IG LLFVFC+AQR++S+GA + A A A Sbjct: 279 TGVLILGVIQTLIAFDGTLSSWWTKIFIGALLFVFCVAQRVISLGALRGKPAGSAKAA 336 >gi|300310397|ref|YP_003774489.1| ribose/xylose/arabinose/galactoside ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 328 Score = 97.4 bits (241), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 1/139 (0%) Query: 16 SVAIALLMLALAIYLAHYTRFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAALA 75 V + L++ ALA L T FGR VYA+GGNE +A L G+ R K+A+YA SGF + LA Sbjct: 182 PVILMLIVYALAWLLLQRTAFGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGLA 241 Query: 76 GVLFSFYMLSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAF 135 ++ + ++SG G ELDAIAAVV+GGT + GG G V GTL G ++LG++ + Sbjct: 242 AIILTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNL 301 Query: 136 DGTLSSWWTKIVIGVLLFV 154 G ++ + I+ GV++ + Sbjct: 302 MG-INPYLQDIIRGVIILL 319 >gi|300311740|ref|YP_003775832.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 379 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 2/141 (1%) Query: 15 PSVAIALLMLALAI-YLAHYTRFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAA 73 P V + ++ALA ++ TR G ++AVGG+ +A MG+PV + K+ ++ F+ FCA Sbjct: 224 PKVILWWAVVALAASFVLARTRLGNWIFAVGGDAVAAKNMGVPVRKVKIGLFVFTAFCAC 283 Query: 74 LAGVLFSFYMLSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLI 133 L VL S E +AI A VIGG LLTGGYG V G G LI GV+Q I Sbjct: 284 LFAVLQVGDFGSAAADRGLQKEFEAIIAAVIGGALLTGGYGSVIGACFGALIFGVVQIGI 343 Query: 134 AFDGTLSSWWTKIVIGVLLFV 154 + LSS W ++ +GV+L V Sbjct: 344 TYT-NLSSDWFRVFLGVMLLV 363 >gi|300310064|ref|YP_003774156.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 344 Score = 84.3 bits (207), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 3/154 (1%) Query: 17 VAIALLMLALAIYLAHYTRFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAALAG 76 VA+A+++L+ I T G +YA+GGN Q+A L G+ VG + +Y+ SG + LAG Sbjct: 194 VAVAVVLLSWVIL--RKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAG 251 Query: 77 VLFSFYMLSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFD 136 + + + G G ELDAIAAVV+GGT L GG G + GT+ G LI+GV+ + Sbjct: 252 AMSASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGSIWGTVVGALIIGVMNNGLTIL 311 Query: 137 GTLSSWWTKIVIGVLLFVFCLAQRLMSMGAAKAA 170 G LSS+W + G ++ + + + AA++A Sbjct: 312 G-LSSFWQYVAKGAVIVLAVILDKWRQKDAAQSA 344 >gi|300310383|ref|YP_003774475.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 347 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 2/141 (1%) Query: 15 PSVAIALLMLAL-AIYLAHYTRFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAA 73 P+ + L ++A+ A + + T FGR +A+G NE++ L G+ V KVA+Y FSG Sbjct: 195 PNAVLILFLVAIGASIILNKTVFGRYTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICG 254 Query: 74 LAGVLFSFYMLSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLI 133 +AG++ + + S QG ELDAIAAVVIGGT L+GG G + GT+ G I+ V+ + Sbjct: 255 IAGLIIASRLNSAQPALGQGYELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGL 314 Query: 134 AFDGTLSSWWTKIVIGVLLFV 154 W T +V GV++ + Sbjct: 315 RIMSVAQEWQT-VVTGVIIIL 334 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 401,362 Number of extensions: 12741 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 15 Length of query: 186 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 106 Effective length of database: 1,241,070 Effective search space: 131553420 Effective search space used: 131553420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)