BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0226.0004.p (591 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 576 e-165 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 280 2e-76 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 225 6e-60 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 191 2e-49 gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 65 1e-11 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 576 bits (1485), Expect = e-165, Method: Compositional matrix adjust. Identities = 300/593 (50%), Positives = 398/593 (67%), Gaps = 6/593 (1%) Query: 1 VQIQQAVALHQSGELDKAEALYTKVLSKFPRHFQALYLLGMLELHRKNHKEALELIDAAL 60 + +Q+A+ALHQ G+L AE LY KVL K PRHF+A YL GML+LH+++ + A + A+ Sbjct: 10 ILLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAEAQLAKAI 69 Query: 61 KINPTHIDALFDRATILEDTERYTEALRAYDLVLALKSDFTEALYRRGNVLRAMKRHMEA 120 ++NP H+D FD A L R EA+ YDLVL + +DF EAL RG LR + R+ EA Sbjct: 70 ELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNREA 129 Query: 121 LDCYKRVLAVKPDHAQAWLKQGNSLNDLGRLREALTCYEKAVEAAPEYPEALFNLANTLK 180 L +R A+ PD+A AW ++GN L+D +A YE+AV P++ EA FNL NT K Sbjct: 130 LADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCK 189 Query: 181 EFDRLDEAMATYDKVLKIEPDFSEAIANRAFLLVGQNRLEEALAAYDHALQLMPDSTEAL 240 + ++LD+A+ YD+ L+++PDF EAI+NR ++L R EAL AYD AL L + + Sbjct: 190 DGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLW 249 Query: 241 YNRAATLEELQRYDEAIQAYGRVPQNNPNFQSARWNTALANLKLGNLETGWRQYEQRWQT 300 +NR +TLE+L R++EA ++Y R P+ SA WN AL L+ G+ GW+ +E RW T Sbjct: 250 FNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWAT 309 Query: 301 EQMRKTQRYFSQPLWLGQESLLGKTILVHSEQGFGDTLQFVRYVPLLAERGARVILQVQP 360 EQMR QR F QPLWLG++ L GKTIL+H+EQGFGDTLQFVRY PLLA RGARVIL+VQP Sbjct: 310 EQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQP 369 Query: 361 ALKPLLAKVKGVAFLLATGE-QPPPFDLHCPLMSLPLALETFALSDIPNQTYLAADPVKS 419 AL LA + GV ++ T PPFD HCPLMSLPLA +TF+ +DIP YL + Sbjct: 370 ALTRQLAGLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSW 429 Query: 420 EGWRVRLGDKHKPRVGLVWAGSNPRANSPASKRLDAVRSVPFAALSPLL----QNDAVDY 475 W RL RVGLVWAGS+ + + P + R+D RS+PFA L+PL+ ++ A+++ Sbjct: 430 AAWHQRLPRNRALRVGLVWAGSSAQTH-PDAVRIDGERSLPFATLAPLVELAREHAALEF 488 Query: 476 SALQVGEEALMQLRVHGDGKRVADYSRELRDFSDTAALIDNLDLVISVDTAVAHLAGALG 535 +LQVG++A+ QL H V D S EL DF++T AL+ NLDL+I+VDT+V HLAGALG Sbjct: 489 YSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALG 548 Query: 536 KPVWLLNRYNPDWRWLLERNDSPWYPSMRIFRQSKAGDWSDVIRQVQAELQAQ 588 +PVWLLNR+N WRW +ER DSPWY M IF Q AG W +VI +V+A LQ Q Sbjct: 549 RPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQQ 601 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 280 bits (716), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 194/590 (32%), Positives = 285/590 (48%), Gaps = 56/590 (9%) Query: 15 LDKAEALYTKVLSKFPRHFQALYLLGMLELHRKNHKEA-LELIDAALKINPTHIDALFDR 73 +D+A ALY + + R +A + LH KN EA + + A+K P L Sbjct: 108 IDEAIALYEHAI-RIDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHL 166 Query: 74 ATILEDTERYTEALRAYDLVLALKSDFTEALYRRGNVLRAMKRHMEALDCYKRVLAVKPD 133 L + +RY EA+ L L+ F + G AM+ + EA++ +K + + P Sbjct: 167 GRALIECKRYNEAVAVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQ 226 Query: 134 HAQAWLKQGNSLNDLGRLREALTCYEKAVEAAPEYPEALFNLANT-LKEFDRLDEAMATY 192 A K +S L R+ EA + +E AP+ P A L ++ DR D+AM + Sbjct: 227 DTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMF 286 Query: 193 DKVLKIEPDFSEAIANRAFLLVGQNRLEEALAAYDHALQLMPDSTEALYNRAATLEELQR 252 +K L+++ + N + LE+A+ + AL+L Sbjct: 287 NKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALEL-------------------- 326 Query: 253 YDEAIQAYGRVPQNNPNFQSARWNTALANLKLGNLETGWRQYEQRWQTEQMRKTQRYFSQ 312 PN+ +AR N AL+ L G+L+ GW +E R T + R + Sbjct: 327 --------------RPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHK 372 Query: 313 -----PLWLGQESLLGKTILVHSEQGFGDTLQFVRYVPLLAERGARVILQVQPALKPLLA 367 P W G+ SL GK IL+ EQGFGD++QF+RYV ++ ++GARV L V+ L L Sbjct: 373 LFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQ 432 Query: 368 KVKGVAFLLATGEQPPPFDLHCPLMSLPLALETFALSDIPN--QTYLAADPVKSEGWRVR 425 L+ + PP D LMSLP A+ T + DIP+ YL+ADP+ W + Sbjct: 433 SYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEK 492 Query: 426 L----GDKHKPRVGLVWAGSNPRANSPASKRLDAVRSVPFAALSPLLQNDAVDYSALQVG 481 + K RVG+VW G+ N D RS+ + L Q +++ +LQ G Sbjct: 493 IRQLSQSPEKLRVGVVWGGNPEHGN-------DRHRSIAMDKFATLFQLPNIEFYSLQKG 545 Query: 482 EEALMQLRVHGDGKRVADYSRELRDFSDTAALIDNLDLVISVDTAVAHLAGALGKPVWLL 541 + L + G + + + +DF+DTAA I NLDLV+SVDT+V HLAGALG P W+L Sbjct: 546 K-PLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVL 604 Query: 542 NRYNPDWRWLLERNDSPWYPSMRIFRQSKAGDWSDVIRQVQAELQAQTQR 591 + PDWRWL +R DSPWYP MR+FRQ DW V+ +V EL A Q+ Sbjct: 605 LPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQK 654 Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 51 EALELIDAALKINPTHIDALFDRATILEDTERYTEALRAYDLVLALKSDFTEALYRR--- 107 EA L A L NPT + A R + ++ +A AY L A+++D A Y Sbjct: 42 EAKALCMAVLSRNPTLVFANHARGLVAMHEGKFADA-EAY-LRKAIEADPENAEYMSNLA 99 Query: 108 GNVLRAMKRHMEALDCYKRVLAVKPDHAQAWLKQGNSLNDLGRLREALTCYEKAVEAAPE 167 G VL + R EA+ Y+ + + DH + + N+L++ ++ +E AV+ P Sbjct: 100 GTVL-SQDRIDEAIALYEHAIRIDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPN 158 Query: 168 YPEALFNLANTLKEFDRLDEAMATYDKVLKIEPDFSEAIANRAFLLVGQNRLEEALAAYD 227 P L +L L E R +EA+A K L+++ F+ + +EA+ ++ Sbjct: 159 APGPLSHLGRALIECKRYNEAVAVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHK 218 Query: 228 HALQLMPDSTEALYNRAATLEELQRYDEAIQAYGRVPQNNP 268 A+ L P T A A + +L R DEA + RV + P Sbjct: 219 TAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAP 259 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 225 bits (574), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 194/565 (34%), Positives = 279/565 (49%), Gaps = 29/565 (5%) Query: 39 LGMLELHRKNHKEALELIDAALKINPTHIDALFDRATILEDTERYTEALRAYDLVL-ALK 97 L + ++++ EA L+ A L +P DAL ++ R+ EA A+ L L Sbjct: 9 LALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRLLP 68 Query: 98 SDFTEAL---YRRGNVLRAMKRHMEALDCYKRVLAVKPDHAQAWLKQGNSLNDLGRLR-- 152 D EAL YR G R +A Y+ ++ + ++ +L + Sbjct: 69 PDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQGMSPSGKN 128 Query: 153 --EALTCYEKAVEAAPEYPEALFNLANTLKEFDRLDEAMATYDKVLKIEPDFSEAIANRA 210 +AL E+A++ P + A + + D A + L+++ ++ Sbjct: 129 DPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLAAG 188 Query: 211 FLLVGQNRLEEALAAYDHALQLMPDSTEALYNRAATLEELQRYDEAIQAYGRVPQNNPNF 270 + Q + EEAL YD AL L P+ +A +R TL L++++EAI +Y R + + Sbjct: 189 LVEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKD 248 Query: 271 QSARWNTALANLKLGNLETGWRQYEQRWQTEQMRKTQRYFSQPLWLGQESLLGKTILVHS 330 A N AL+ L LG LE W YE RW+ R+ + P W G SL GK IL+ + Sbjct: 249 ADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSA-DPYRHATIPAWNGGSSLAGKRILLWA 307 Query: 331 EQGFGDTLQFVRYVPLLAERGARVILQVQPALKPLLAK--VKGVAFLLATGEQPPPFDLH 388 EQG GDT+QF RYV L+ + GA+V+L+V +L L+ V L+A GE P D Sbjct: 308 EQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLPEVDFQ 367 Query: 389 CPLMSLPLALETFALSDIPNQT-YLAADPVKSEGWRVRLG-----DKHKPRVGLVWAGSN 442 PLMSLPL T A DIP YL ADP + W RL + R+GLV +G+ Sbjct: 368 LPLMSLPLVCNTRA-DDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNA 426 Query: 443 PRANSPASKRLDAVRSVPFAALSPL-LQNDAVDYSALQVG-EEALMQLRVHGDGKRVADY 500 N DA RS+ + +PL L +D+ +Q +A Q G Sbjct: 427 GNVN-------DARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGA 479 Query: 501 SRELRDFSDTAALIDNLDLVISVDTAVAHLAGALGKPVWLLNRYNPDWRWLLERNDSPWY 560 + + DF+DTAA++ +DLVISVDTA AHLAGA+ PVW+ Y PDWRWLL DSPWY Sbjct: 480 A--INDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWY 537 Query: 561 PSMRIFRQSKAGDWSDVIRQVQAEL 585 P+ R+FRQ + G W DVI ++A L Sbjct: 538 PTARLFRQQQPGAWDDVILTLRAAL 562 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 191 bits (484), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 163/500 (32%), Positives = 243/500 (48%), Gaps = 27/500 (5%) Query: 99 DFTEALYRRGNVLRAMKRHMEALDCYKRVLAVKPDHAQAWLKQGNSLNDLGRLREALTCY 158 F +R ++L+ M EA+ L + PD+ +A +L+ R A C Sbjct: 44 SFLPLYMQRADLLQEMGALPEAIAACAACLDLAPDYDEA-----RALHRSLLQRWATQCE 98 Query: 159 EKAVEAAPEYPEALFNLANTLKEFDRLDEAMATYDKVLKIEPDFSEAIANRAFLLVGQNR 218 + + AL +LA + D+ A+A ++ L A A +L+ NR Sbjct: 99 LQTADEGASGSAALIDLARARLQLDQPLPALAAVERALASGQAGLALHALHADILLRLNR 158 Query: 219 LEEALAAYDHALQLMPDSTEAL--YNRAATLEELQRYDEAIQAYGRVPQNNPNFQSARWN 276 EEAL Y A D AL +N A L + R ++A A+ + + +P+F A Sbjct: 159 HEEALECYPPAAD--EDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVG 216 Query: 277 TALANLKLGNLETGWRQYEQRWQTEQMRKTQRYFSQPLWLGQESLLGKTILVHSEQGFGD 336 A L + GWR +E R+ ++ + +P W E + GK +L+ +EQG GD Sbjct: 217 RAHMLLSQQHYAEGWRAHEARFGIAELARRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGD 276 Query: 337 TLQFVRYVPLLAERGARVILQVQPALKPLLAKVKGVAFLLATGEQPPPFDLHCPLMSLPL 396 TLQF RY+PL+A++ A V L +L +LA +A + P DLH L+SLPL Sbjct: 277 TLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVRCMANPGEAPDHDLHASLLSLPL 336 Query: 397 ALETFALSDIPNQTYLAADPVKSEGWRVRLGD-----KHKPRVGLVWAGSNPRANSPASK 451 L P YLAA P + + W+ L +PR+G+ WAG Sbjct: 337 LLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQ-------YA 389 Query: 452 RLDAVRSVPFAALSPLLQNDAVDYSALQVGEEALMQLRVHGDGKRVADYSRELRDFSDTA 511 + R +P AL+PL A D+ +LQV A Q +R+ ++ L D++DTA Sbjct: 390 TVHHSRDIPLDALAPLWTLPA-DFVSLQVEVPAGDQAAHATLAQRL--HTPTLVDWADTA 446 Query: 512 ALIDNLDLVISVDTAVAHLAGALGKPVWLLNRYNPDWRWLLERNDSPWYPSMRIFRQSKA 571 AL+ LDLVISVDTAV HLAGALG P L RY+ +WRW ++ + +PWYPS+++ RQ + Sbjct: 447 ALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLRQRER 506 Query: 572 GDWSDVIRQVQAELQAQTQR 591 G W V+ ++ L TQR Sbjct: 507 GQWGPVVEEM---LAVCTQR 523 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 88/199 (44%) Query: 3 IQQAVALHQSGELDKAEALYTKVLSKFPRHFQALYLLGMLELHRKNHKEALELIDAALKI 62 ++QA+ H +G LD+A A+Y VL P H AL+ G+ H EAL+ ++ A + Sbjct: 22 LRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASAL 81 Query: 63 NPTHIDALFDRATILEDTERYTEALRAYDLVLALKSDFTEALYRRGNVLRAMKRHMEALD 122 P + D DR +L ++ A +AY LAL+ D G VL + +A+ Sbjct: 82 EPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPDAIS 141 Query: 123 CYKRVLAVKPDHAQAWLKQGNSLNDLGRLREALTCYEKAVEAAPEYPEALFNLANTLKEF 182 ++R L + PD + L G G +A +A P ++ L + Sbjct: 142 AFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFL 201 Query: 183 DRLDEAMATYDKVLKIEPD 201 RL EA Y L+ EPD Sbjct: 202 GRLPEAAEAYRAWLREEPD 220 Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 65/137 (47%) Query: 134 HAQAWLKQGNSLNDLGRLREALTCYEKAVEAAPEYPEALFNLANTLKEFDRLDEAMATYD 193 H +A L+Q + GRL +A YE +EA P +P AL L + + DEA+ + Sbjct: 17 HYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLE 76 Query: 194 KVLKIEPDFSEAIANRAFLLVGQNRLEEALAAYDHALQLMPDSTEALYNRAATLEELQRY 253 +EPD ++ +R +L + A AY AL L PD N A L + + Sbjct: 77 LASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKR 136 Query: 254 DEAIQAYGRVPQNNPNF 270 +AI A+ R Q +P+F Sbjct: 137 PDAISAFERALQIDPDF 153 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,856,455 Number of extensions: 78676 Number of successful extensions: 359 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 308 Number of HSP's successfully gapped: 10 Length of query: 591 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 500 Effective length of database: 1,188,985 Effective search space: 594492500 Effective search space used: 594492500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)