BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0063.p
         (485 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311837|ref|YP_003775929.1| O-linked N-acetylglucosamine tr...   334   8e-93

>gi|300311837|ref|YP_003775929.1| O-linked N-acetylglucosamine
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 623

 Score =  334 bits (857), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 162/310 (52%), Positives = 220/310 (70%), Gaps = 13/310 (4%)

Query: 178 DEFIEI-TPGEILDQLKQIRSVAQAKAAQVFYMPSVGMFALTMFLSNLRLAPLQAMALGH 236
           DEFI++  P +++  ++++R +A  +  +VFYMPSVGMF +TMF +NLRLAPLQ   LGH
Sbjct: 310 DEFIDLGKPSDLIGSIRRLREIAGQRQPRVFYMPSVGMFPITMFAANLRLAPLQVAGLGH 369

Query: 237 PATSHSPEMDYVVVEDDYVGDPACFSEQLLRLPSDGMPYRASAHASLLDLPTEIRETPDV 296
           PAT+HSP +DY+ VE+D+VGDPACFSEQLLRLP+DG PYR SA     ++P   R     
Sbjct: 370 PATTHSPHIDYISVEEDFVGDPACFSEQLLRLPADGQPYRPSAIP--FEIPIRERSDRPE 427

Query: 297 VQIVVASTTMKLNPDFLRACQRILREASS--------KVHFHFLIGQAQGMLIYPQVKRV 348
           VQ+ +A+TTMKLNP FL ACQ+I+  A++        ++  HFL+GQAQG+L YPQ++R+
Sbjct: 428 VQVAIAATTMKLNPRFLMACQQIVALAANPPAGQPGRQLRLHFLVGQAQGLL-YPQLRRL 486

Query: 349 IGQFLGDAATVYPHQHYGAYMQVIARCDMFINPFPFGNTNGIIDTVSAGLVGVCKTGPEV 408
           I +++  +A VY HQ Y  Y+ +  +CDMF++P PFGNTNGIID  + GL GVCKTGPEV
Sbjct: 487 ILRYV-PSAQVYAHQPYQQYLSIFNQCDMFLSPLPFGNTNGIIDAFTVGLPGVCKTGPEV 545

Query: 409 HEHIDEGLFGRLKFPQWLVTPTVDEYISATVRLADDHALRNRLRRELTGVDAVQTIFSGR 468
            EHIDEGLF R+  P W +  T+D+YI A VR+A D+  R+ L   L    A+Q +F GR
Sbjct: 546 FEHIDEGLFRRVGLPDWTIAATLDDYIQAAVRMATDYPARSALYAHLADPRALQRLFEGR 605

Query: 469 PEIMGQMMLA 478
           PE +G  ++A
Sbjct: 606 PESLGDALMA 615



 Score =  155 bits (391), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 3   LLSALDANYGLPGADFTARPLSSVQADELNDHVVTRIAAAISCLFADSEFQFSQLGFGQM 62
           LL+ +D +YG     F      +V A  L  H+++RI +AIS LF+D  F  S  GFGQ+
Sbjct: 33  LLALIDRHYGQLTGQFPLSVSPAVPAAALEQHILSRITSAISALFSDPSFHISPDGFGQL 92

Query: 63  LVMHRWLSSLFAASSFRNADHVVRAWNIRGKGNLREVEISDRDLIKFCLLYSPESEIPMD 122
           +   RWL++LFAAS F +ADH++RA N  G    + VE+   DL+KFCLLYSPESE+P+D
Sbjct: 93  IHFQRWLAALFAASPFIHADHILRALN-PGGPQAKTVEVKPLDLVKFCLLYSPESELPLD 151

Query: 123 LDAFWAHDKTLVASLCLALLSPRLLATPVAYEKREQILPWLSARLEQIEDLAQL 176
           ++  WA +  L A+L LAL+SPR L TP A+ KRE +L WL  RL+Q++ LA L
Sbjct: 152 VEMLWAQNPPLAAALFLALMSPRFLGTPAAHSKREALLGWLPDRLQQLDSLAGL 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,416,026
Number of extensions: 54762
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 2
Length of query: 485
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,198,455
Effective search space: 474588180
Effective search space used: 474588180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 132 (55.5 bits)