BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0051.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309377|ref|YP_003773469.1| ABC transporter ATPase [Herbasp...   161   4e-41

>gi|300309377|ref|YP_003773469.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  161 bits (408), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 105/139 (75%)

Query: 107 ILQAADLSFSYPDHEVFKDLSLALPAGVTIIRGGDGRGKTSLIRVLVGELKASGGQLAIN 166
           +L  + L+FSYP  ++F+D S  +  G+T++RGGDGRGKT+L+ +L G +    G L ++
Sbjct: 10  LLLVSRLNFSYPGLDLFQDFSARITPGLTLVRGGDGRGKTTLLNLLAGLMPVRDGVLELD 69

Query: 167 GIRLDQQAAQYKQQVYYVDPRTEAFDQLSVPEYFASVKARFPAFNDAALPELLGGLSLTP 226
           G+RLD +A  Y++QV+++DPR+EA++Q++ PE FA++  R P F+ A LP L  GLSLTP
Sbjct: 70  GLRLDSEAENYRRQVFFIDPRSEAYEQMTPPEVFAALAERHPHFDHARLPALTEGLSLTP 129

Query: 227 HAEKKLFMLSTGSKRKVYL 245
           H EKKLFMLSTGSKRKVYL
Sbjct: 130 HLEKKLFMLSTGSKRKVYL 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 689,460
Number of extensions: 25907
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)