BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0050.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313875|ref|YP_003777967.1| hypothetical protein Hsero_4593...   187   3e-49

>gi|300313875|ref|YP_003777967.1| hypothetical protein Hsero_4593
           [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score =  187 bits (475), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 107/142 (75%)

Query: 5   TVELHRILRTTPEKIYRAFTDAAALAKWLPPYGFTCTVEHLEAKVGGTFRMSFSNFTTGN 64
           TV+L+R+LR  PE++YRAF D  A+ KWLPP+GFT  V H++A+VGG+ +MSF+NF+TG 
Sbjct: 6   TVKLYRVLRAKPERVYRAFLDPDAMVKWLPPHGFTGKVHHMDARVGGSHKMSFTNFSTGQ 65

Query: 65  GHSFGGEYKELVPGELIRYTDKFDDPNLPGELMVTVKLKPVLTGTEVRITQAGIPEMIPV 124
             +FGG Y ELVP E I YTD+FDDPNL GE+ VT+ +   L G+E+ + Q GIP MIP+
Sbjct: 66  TQAFGGTYVELVPNERIVYTDQFDDPNLQGEMKVTISIAACLVGSELTVVQQGIPPMIPL 125

Query: 125 EMCYLGWQESLLQLANLVEPNI 146
           E CY GWQESL  LA LV+P I
Sbjct: 126 EFCYAGWQESLQLLAQLVDPEI 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 519,237
Number of extensions: 21722
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)