BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0041.p
         (351 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309347|ref|YP_003773439.1| chromosomal replication initiat...   641   0.0  

>gi|300309347|ref|YP_003773439.1| chromosomal replication initiator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 465

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/323 (96%), Positives = 317/323 (98%)

Query: 29  KKXQLARAAATQVANNPGVSYNPLFLYGGVGLGKTHVIHAIGNQVLADNPGAKIRYIHAE 88
           K  QLARAAATQVANNPG SYNPLFLYGGVGLGKTH+IHAIGNQVL DNPGAKIRYIHAE
Sbjct: 143 KANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTHIIHAIGNQVLVDNPGAKIRYIHAE 202

Query: 89  QYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQI 148
           QYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQI
Sbjct: 203 QYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQI 262

Query: 149 IITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEMRVAILMKKATLEGVVLSDDVAFF 208
           IITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEMRVAILMKKA+ E VVLSDDVAFF
Sbjct: 263 IITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEMRVAILMKKASAEDVVLSDDVAFF 322

Query: 209 VAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVKDALKDLLSVQNRQISVENIQKTVA 268
           VAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVK+ALKDLLSVQNRQISVENIQKTVA
Sbjct: 323 VAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVKEALKDLLSVQNRQISVENIQKTVA 382

Query: 269 DFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI 328
           DFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI
Sbjct: 383 DFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI 442

Query: 329 SADRAKNPECNHELHVLEQTLKG 351
           +ADRAK+PECNHELHVLEQTLKG
Sbjct: 443 AADRAKSPECNHELHVLEQTLKG 465


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 992,352
Number of extensions: 37781
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,212,660
Effective search space: 321354900
Effective search space used: 321354900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)