BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0038.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309672|ref|YP_003773764.1| cell division FtsI protein/peni...   209   2e-55
gi|300314080|ref|YP_003778172.1| hypothetical protein Hsero_4803...   135   2e-33

>gi|300309672|ref|YP_003773764.1| cell division FtsI
           protein/penicillin-binding protein 2 [Herbaspirillum
           seropedicae SmR1]
          Length = 592

 Score =  209 bits (532), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/110 (89%), Positives = 103/110 (93%)

Query: 114 AAELRNRVLTDTFEPGSTLKPFTVALALDTHRVTPSTVFQTSPGKMTIGTATIGDSHAHG 173
            A+LRNRV+TDTFEPGST+KPFTVALALDTHRVTPSTVFQT+PGKMTIGTATIGDSHAHG
Sbjct: 300 GAQLRNRVVTDTFEPGSTMKPFTVALALDTHRVTPSTVFQTAPGKMTIGTATIGDSHAHG 359

Query: 174 PLTVAQIIEKSSNIGTAKIALEMPAQEMWEMFTNVGLGQQPKFGFPGVAA 223
           PLTVAQIIEKSSNIGTAKIAL MP +EMWEMFT VG GQQPKFGFPG  A
Sbjct: 360 PLTVAQIIEKSSNIGTAKIALGMPPEEMWEMFTTVGFGQQPKFGFPGAVA 409


>gi|300314080|ref|YP_003778172.1| hypothetical protein Hsero_4803
           [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score =  135 bits (341), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 79/105 (75%)

Query: 20  MSVLAIAFPVEAAVPVAQSLIGAGIALTRPLLGLGALVTLLMVFKPLLAGIMRAVVAFFV 79
           MS L +AFP EAA+P AQ+LIG   A  RP LGLGALVT +MVFKPL+ G+ +A V    
Sbjct: 1   MSFLNLAFPAEAAMPFAQTLIGMLAAYVRPALGLGALVTFVMVFKPLILGLAQAAVLLVK 60

Query: 80  PRKSFEQRVAAHRFSGVRMLNRMANDYSGSQPNFAAELRNRVLTD 124
           PRKS EQR+ AH+FSG RMLNRMAN+YS +QPNFAAELRN    D
Sbjct: 61  PRKSLEQRILAHKFSGKRMLNRMANEYSMTQPNFAAELRNMAARD 105


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 638,096
Number of extensions: 23057
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)