BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0034.p
         (187 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314078|ref|YP_003778170.1| uncharacterized protein involve...   155   2e-39
gi|300311615|ref|YP_003775707.1| outer membrane biogenesis prote...    70   8e-14

>gi|300314078|ref|YP_003778170.1| uncharacterized protein involved
           in outer membrane biogenesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 682

 Score =  155 bits (392), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 101/161 (62%), Gaps = 6/161 (3%)

Query: 1   MPRTSKIIGFSLAGVIALIVLLVILIITFDWNRARPWINQRVSDATGRHFAIQGDLVVKW 60
           MPR +KII +  A +I LI   VI I++FDWNRA+PWIN+RVS + GR FAI GDL + W
Sbjct: 1   MPRLTKIILWLCASLILLITAAVIFILSFDWNRAKPWINERVSASIGREFAIDGDLSLHW 60

Query: 61  -RAPDSPQTS----WARWIPWPHVSANDIVLGNPDWAPANSNMATVKQLNVTLNPWPLLQ 115
            RA   P  +    W RW+PWP + A  + +GNP        MAT+ Q+  TLNP PLL 
Sbjct: 61  QRAQTLPGAAPPGFWERWLPWPRLQAEQLRIGNPPAFSQAGQMATIGQVTFTLNPLPLLV 120

Query: 116 HKIVLPDLEAQDPYLQLLRRKDAVNNWTFKSDDS-PSTWQF 155
           H I LP L+ +DP + LLR   AVNNWTFKS  + PS W  
Sbjct: 121 HDIALPSLDIRDPSVSLLRNAQAVNNWTFKSSSAGPSAWNL 161


>gi|300311615|ref|YP_003775707.1| outer membrane biogenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 654

 Score = 70.5 bits (171), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 30  DWNRARPWINQRVSDATGRHFAIQGDLVVKWR--APDSPQTSWARWIPWPHVSANDIVLG 87
           DWN A+PW+ +++S A GR   + G+L + W     D    + AR  P   + A  + +G
Sbjct: 41  DWNSAKPWLGRQLSAALGRDIRVDGNLDLSWSLAQADDEAGALARLAPQLRLRAERLFIG 100

Query: 88  NPDWAPANSNMATVKQLNVTLNPWPLLQHKIVLPDLEAQDPYLQLLRRKDAVNNWTFKSD 147
           NPDWA ++ ++     L+V  +P PLL     + DL  +   L + R  D   NW F S 
Sbjct: 101 NPDWAHSSDHLVRAAALDVRFSPLPLLHWHWHVTDLRVEGLDLVMERADDQRKNWRFSSQ 160

Query: 148 DSPSTWQF 155
              S W F
Sbjct: 161 PR-SRWSF 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,977
Number of extensions: 23844
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,241,070
Effective search space: 132794490
Effective search space used: 132794490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)