BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0028.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 441 e-125 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 219 2e-58 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 190 8e-50 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 178 3e-46 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 177 5e-46 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 441 bits (1135), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/239 (89%), Positives = 225/239 (94%) Query: 13 STGSGTAALEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGA 72 S+ S L+ISDLQSWYGESHILHNVNL+V++GEVVTLLGRNGAGRTTTLRSIMGLVG Sbjct: 4 SSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGT 63 Query: 73 RKGSIKINGNETIAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIE 132 RKGSIKING ETI + T+KIAH GVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSI+ Sbjct: 64 RKGSIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSID 123 Query: 133 EIYDMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALAR 192 EIY+MFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALAR Sbjct: 124 EIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALAR 183 Query: 193 MILMLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 251 MI LKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASS+LE+K Q LNELLGV Sbjct: 184 MITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 219 bits (558), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/231 (48%), Positives = 154/231 (66%), Gaps = 3/231 (1%) Query: 21 LEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIKIN 80 L++ D+ +YG+SHIL V+L V+ GEVVTLLGRNGAG+TTTL+SI+G+V +G + Sbjct: 3 LQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLFE 62 Query: 81 GNETIAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIEEIYDMFPN 140 G +P+YKIA +GV PE RGIF L+ EENL + ++ + +EEIY +FP Sbjct: 63 GQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTM---AARKESAWGLEEIYAIFPR 119 Query: 141 LKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMILMLKAK 200 LKERR + G +LSGGEQQMLA+AR L T R+L+LDE EGLAPVIV + I +KA Sbjct: 120 LKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKAT 179 Query: 201 GYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 251 G +I++VEQN LADR Y++E G+IV +++E + + LGV Sbjct: 180 GMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 190 bits (483), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 145/227 (63%), Gaps = 5/227 (2%) Query: 21 LEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIKIN 80 L++ L WY ++HIL ++L + GEVV L+GRNGAG++TTL+++MGL+ R+G I++ Sbjct: 6 LQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRLA 65 Query: 81 GNETIAMPTYKIAHQGVGYCPEERGIFSSLSAEENL---MLPPFVSKTDKGMSIEEIYDM 137 G + + ++ A G+GY PE+R IF+ LS ENL PP + + ++++ Sbjct: 66 GRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPH--WTPQALFEL 123 Query: 138 FPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMILML 197 FPNL G R+SGGEQQML +AR L RLLLLDE SEG+APVIV+ +A MI L Sbjct: 124 FPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQEL 183 Query: 198 KAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQK 244 K G I++ EQN FA+ + DR Y+++ G+IV + + L++ Q+ Sbjct: 184 KRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQ 230 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 178 bits (452), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 145/223 (65%), Gaps = 5/223 (2%) Query: 30 YGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIKINGNETIAMPT 89 YG+S +L +V+ ++ +GE + LLGRNG G+T+ L ++MGL GSI+ G + + T Sbjct: 14 YGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIRWRGGDIARVAT 73 Query: 90 YKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIEEIYDMFPNLKERRNSQG 149 +K AH G+G+ P+ER +F SLS EE+L + K D +++IY +FP L ERR++ G Sbjct: 74 HKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWD----LQKIYQIFPRLHERRHNMG 129 Query: 150 TRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMI-LMLKAKGYTIVMVE 208 +LSGGEQQMLA+AR L +LLLDE EGLAP+IVQ L ++I ++ +G ++++VE Sbjct: 130 NQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSEEGMSVIVVE 189 Query: 209 QNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 251 Q+ R A L R V++ G+IV + S L + KL+ L+ V Sbjct: 190 QHARMALSLTQRAIVLDRGRIVHASDSQSLLADGDKLDRLVAV 232 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 177 bits (450), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 139/212 (65%), Gaps = 4/212 (1%) Query: 21 LEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIKIN 80 L ++ LQ+ YG S +LH V+L+V +GE+V++LGRNGAGR+T L+++MGL+ +R G + Sbjct: 8 LSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR-GDCRFE 66 Query: 81 GNETIAMPTYKIAHQGVGYCPEERGIFSSLSAEENLML--PPFVSKTDKGMSIEEIYDMF 138 G + +PT+ IA G+GY PE R +F +LS +NL+L P + +G ++I+ +F Sbjct: 67 GRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPG-PQPGRGWCEDDIHALF 125 Query: 139 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMILMLK 198 P L +RR LSGGEQQMLA+ R L LLL+DE +EGLAP +V+ +AR + L+ Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 199 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIV 230 +G +++VEQ A L+ R YVM G++V Sbjct: 186 TRGVAVLLVEQKQALALELSQRVYVMGRGEMV 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 668,193 Number of extensions: 26424 Number of successful extensions: 472 Number of sequences better than 1.0e-08: 114 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 125 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)