BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0024.p
         (122 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm...   201   1e-53

>gi|300314069|ref|YP_003778161.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  201 bits (512), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 111/122 (90%)

Query: 1   VLSAALTGLAGSTKALVLGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGAVIIIMLE 60
           VLSA L+GLAG+TK LVLGFETLTDVHWSMSGLVVLMTLVGGLGTI+GPIVGAVIIIMLE
Sbjct: 205 VLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTILGPIVGAVIIIMLE 264

Query: 61  NKLGDIGNWLAGVTHIEWFNTLGDSVTIVTGFIFIVCVLAFRRGIVGEILHLFGKRSPTA 120
           NKLGDIG WLA VTHI+WFNTLGDSVTIVTGFIFIVCVLAFR+GIVGEIL L  K   + 
Sbjct: 265 NKLGDIGAWLASVTHIDWFNTLGDSVTIVTGFIFIVCVLAFRKGIVGEILALTRKGQASG 324

Query: 121 SH 122
           SH
Sbjct: 325 SH 326


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.143    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 294,009
Number of extensions: 7975
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 48
Effective length of database: 1,269,480
Effective search space: 60935040
Effective search space used: 60935040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)