BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0008.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314066|ref|YP_003778158.1| methyltransferase GidB [Herbasp...   188   5e-49
gi|300314065|ref|YP_003778157.1| outer membrane lipoprotein [Her...   167   8e-43

>gi|300314066|ref|YP_003778158.1| methyltransferase GidB
           [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  188 bits (477), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 112/138 (81%), Gaps = 1/138 (0%)

Query: 3   TTTTDL-QLGDTLTAGAQALGLTLSAGQHKKLLAYLALMAKWNRTYNLTALRDPAQMMTH 61
           + T DL  L  TL  GA A+GLTLS  Q  KL+AY AL+AKWN+ YNLTALRDPAQM+TH
Sbjct: 2   SNTADLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVTH 61

Query: 62  HLLDSLAAVTAFAQADNVLDVGAGGGLPGIVLAIWAAEARPAMKVSMIDTVHKKTAFLTQ 121
           HLLDSL+AV+AF  A  VLDVGAGGGLPGIVLAIWAA+A+P MK++++DTV KKTAFL Q
Sbjct: 62  HLLDSLSAVSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQ 121

Query: 122 AKAELQLSNVSVYTARVE 139
            KA+LQL NV+V  ARVE
Sbjct: 122 VKAQLQLGNVTVVHARVE 139


>gi|300314065|ref|YP_003778157.1| outer membrane lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  167 bits (424), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 94/112 (83%), Gaps = 1/112 (0%)

Query: 196 RSDGDIDVINRCKVEGGVLDQADGQARVIEGSHNARLQVRFAPAWLAWFPLVWGDYWVID 255
           R DG IDV NRC+   GV D+A G ARV+ GS+N++L+VRFAPAWL+W P+VWGDYW++D
Sbjct: 66  REDGMIDVTNRCRTADGV-DEAKGVARVVAGSNNSKLEVRFAPAWLSWIPMVWGDYWIMD 124

Query: 256 LDADYSVATVGTPSRDYLWILARKPVLSTAEYEAAVNNATKQGFDTSKLVKT 307
           LD  Y++ATVG+PSR+YLWIL+R P +S  +YE A+NNATKQGFDTS++VK+
Sbjct: 125 LDPQYTLATVGSPSREYLWILSRTPTISDEQYENALNNATKQGFDTSRVVKS 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,339
Number of extensions: 33429
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)