BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0006.p
         (496 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314063|ref|YP_003778155.1| chromosome partitioning ParA pr...   454   e-129
gi|300314062|ref|YP_003778154.1| chromosome partitioning ParB pr...   411   e-116

>gi|300314063|ref|YP_003778155.1| chromosome partitioning ParA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  454 bits (1168), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/237 (90%), Positives = 227/237 (95%)

Query: 1   MAKIFCVANQKGGVGKTTTAVNLAAGLAQHNQRVLLADLDPQGNATMGSGINKAELQGSI 60
           MAKIFCVANQKGGVGKTTTAVNLAAGLAQ NQRVLLADLDPQGNATMGSG+NKA L+ SI
Sbjct: 1   MAKIFCVANQKGGVGKTTTAVNLAAGLAQLNQRVLLADLDPQGNATMGSGVNKATLEASI 60

Query: 61  YEVLLGMSDIKSVRKRSESGNFDVLPANRELAGAEVEMVELENREKRLKDAFAAVADDYD 120
           YEVLLGMSDI++VRKRSE+G FDVLPANRELAGAEVEMVELE RE RLK+AFA VADDYD
Sbjct: 61  YEVLLGMSDIRAVRKRSEAGGFDVLPANRELAGAEVEMVELEQREARLKNAFAQVADDYD 120

Query: 121 FILIDCPPALSLLTLNGLCSAHGVVIPMQCEYYALEGLSDLVNTIKKVHAKLNPDLKIIG 180
           FILIDCPPALS+LTLNGLCSAHGV+IPMQCEYYALEGLSDLVNTIKKVHAKLNP+LK+IG
Sbjct: 121 FILIDCPPALSMLTLNGLCSAHGVIIPMQCEYYALEGLSDLVNTIKKVHAKLNPELKVIG 180

Query: 181 LLRVMFDPRMTLSQQVSEQLEQHFGDKVFKTVIPRNVRLAEAPSYGMPGVNFDAAXK 237
           LLRVMFDPRMTLSQQVS+QLEQHFGDKVFKTVIPRNVRLAEAPSYG+PGV FD A K
Sbjct: 181 LLRVMFDPRMTLSQQVSDQLEQHFGDKVFKTVIPRNVRLAEAPSYGLPGVTFDPASK 237


>gi|300314062|ref|YP_003778154.1| chromosome partitioning ParB
           protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  411 bits (1056), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/228 (90%), Positives = 215/228 (94%), Gaps = 3/228 (1%)

Query: 239 KKSKGLGRGLDALLGGSSDITEDVPVVA---GSPSVMPVTDLQAGKYQPRSRMDEGALNE 295
           KKSKGLGRGLDALLGGSSDITE+    A   G P+VMPVT+LQAGKYQPR+RMDEGALNE
Sbjct: 6   KKSKGLGRGLDALLGGSSDITEEAQAQAAAQGLPTVMPVTELQAGKYQPRTRMDEGALNE 65

Query: 296 LAASIKEQGLLQPILIRAIGQKNGKDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDDQTT 355
           LAASIKEQGLLQPILIRAIGQKNG+D YEIIAGERRFRAAKIAGLTEVPVLV+NVDDQTT
Sbjct: 66  LAASIKEQGLLQPILIRAIGQKNGRDTYEIIAGERRFRAAKIAGLTEVPVLVRNVDDQTT 125

Query: 356 AAMALIENMQREDLNPLEEAQGIHRLITDFNFTHEQAAVAVGRSRSAVSNLLRLLNLAKP 415
           AAMALIENMQREDLNPLEEAQGIHRLITDF FTHEQAA+AVGRSRSAVSNLLRLLNLAKP
Sbjct: 126 AAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAAIAVGRSRSAVSNLLRLLNLAKP 185

Query: 416 VQTMLMAGDIDMGHARALLAVDSATQITLANQIVAKRMSVREAEKLVV 463
           VQTMLMAGDIDMGHARALL VDSATQI LANQIVAKRMSVR+AEKLV 
Sbjct: 186 VQTMLMAGDIDMGHARALLVVDSATQIQLANQIVAKRMSVRDAEKLVT 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,258,558
Number of extensions: 46019
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 407
Effective length of database: 1,198,455
Effective search space: 487771185
Effective search space used: 487771185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)