BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0223.0024.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o...   357   e-100

>gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of
           sigma subunit [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  357 bits (917), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/238 (69%), Positives = 195/238 (81%)

Query: 1   MAQAIGDACLVWEPRDVVGGDFYHLECFPDGWFAAVADCTGHGVPGAFLTLIASSAIKQA 60
           M  A+ DACL+WEPRDVVGGDFYH E  P GWFAAVADCTGHGVPGAFLTLIASSA+KQA
Sbjct: 177 MGAALQDACLIWEPRDVVGGDFYHFEEHPQGWFAAVADCTGHGVPGAFLTLIASSALKQA 236

Query: 61  LEQHGPRDPALVMGEVNRGMKQVLGQHAAATQLSESDDGMDACFFWFDAVSQRLTCANAK 120
           LE HGPRDPA +M EVNR MK+VLGQH A  + SESDDGMDACFFWFD+ S+ LTCANAK
Sbjct: 237 LELHGPRDPARLMQEVNRSMKRVLGQHGAQDKPSESDDGMDACFFWFDSASRTLTCANAK 296

Query: 121 MPLFTLQPGEDAVQTLDGERTGLGYVDTPDDMQWSNREVQLSDGAIVMIATDGIIDQIGG 180
           M LF L   ++ VQT++G+R GLGYVDTP+DMQW+N  + ++DG +V + TDGIIDQIGG
Sbjct: 297 MALFLLPAADEQVQTVEGKRVGLGYVDTPEDMQWTNHCLPVADGDMVFVCTDGIIDQIGG 356

Query: 181 PKNIAFGKQRLRKALLEQRDFPMADAGKKIMEQQRIYQGQQRRRDDLTFFGFRVGGSF 238
            K+IAFGKQRLR+ LLE R  P+A+ G+ +M+  R YQG QRRRDD++FFG R+GG F
Sbjct: 357 AKHIAFGKQRLRRTLLEYRRLPLAELGRTLMDVHRDYQGAQRRRDDISFFGARIGGVF 414


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 795,217
Number of extensions: 32606
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)