BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0223.0023.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o...   242   8e-66
gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911...    96   1e-21

>gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of
           sigma subunit [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  242 bits (618), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 116/148 (78%), Positives = 130/148 (87%)

Query: 8   FSLAPMMGRHLLQPTADALAVEVPVITFDENNATVLEVFGRHRELVSLPVLENEHPIGLI 67
           FSL P  G  L QPTA ALAV+VPV+ FD+NNA VLE+F +H+ELVSLPV+E + PIGLI
Sbjct: 5   FSLTPATGSKLFQPTAGALAVQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRPIGLI 64

Query: 68  SRNIFMSQMSKPYHRELYEKKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFL 127
           SR+IFMSQMSKPYHRELYE+KSCIAFMDKDPLIV+ADTPIETLGALAVASGDKTLADGF+
Sbjct: 65  SRHIFMSQMSKPYHRELYERKSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFM 124

Query: 128 IVDGGKFAGLGSGLELMRMLVDLQAEKN 155
           IV+ G+  GLGSGL LMR LVDLQ EKN
Sbjct: 125 IVEQGQLNGLGSGLALMRELVDLQVEKN 152


>gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 95.9 bits (237), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 2/139 (1%)

Query: 15  GRHLLQPTADALAVEVPVITFDENNATVLEVFGRHRELVSLPVLENEHPIGLISRNIFMS 74
           G+H    T   L  E   ++ + +N TV ++F    +L +LPV+ N  PIGLI+R   + 
Sbjct: 272 GKH--STTVFKLLRETRYVSPEVSNDTVYDMFVNDPQLQALPVVSNGLPIGLINRYSMVE 329

Query: 75  QMSKPYHRELYEKKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFLIVDGGKF 134
           + ++ Y RELY KKSC  FMD +P++ E  T ++ L  L V +    L++GF+I D G++
Sbjct: 330 RFARLYGRELYGKKSCAFFMDPNPILTEQSTSLQDLSNLLVHAESHHLSNGFIITDRGQY 389

Query: 135 AGLGSGLELMRMLVDLQAE 153
            GLG+G +L+R +  +Q +
Sbjct: 390 MGLGTGHDLLREITQMQID 408


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 507,419
Number of extensions: 20307
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)