BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0223.0022.p
         (172 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311752|ref|YP_003775844.1| cytochrome b561 protein [Herbas...   191   3e-50
gi|300310020|ref|YP_003774112.1| cytochrome b561 protein [Herbas...    84   4e-18

>gi|300311752|ref|YP_003775844.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  191 bits (485), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 121/170 (71%)

Query: 2   KKYHPASVFLHWIIFLLFVVALAAIELRGEVPKGTPLRATLKTVHMMAGQLVFLFVLFRL 61
            +YHP SV LHW+IFLLFVVALA IE R ++PKG PLR  L+TVHM AGQLV + V+ RL
Sbjct: 13  SRYHPLSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRL 72

Query: 62  AARWRFGVPPALDAPAWQTRAAGIVHLLLYLVMFALPVTGILFTQAEGKDVMFFSLALPH 121
            AR  FGVPP L  P  Q   A  VHLLLY VM  LPVTGILFTQA G+DV+FF + LP 
Sbjct: 73  LARKAFGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPV 132

Query: 122 VIGQDPALSDTLQDIHELIGNTVYYLVGLHVAGALWHHFIHRDQIFQRMK 171
           ++ +D AL   +++ HE +GN VY+LVGLHV GALWH F  R  I QRM 
Sbjct: 133 ILAKDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRMS 182


>gi|300310020|ref|YP_003774112.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score = 84.3 bits (207), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 4/173 (2%)

Query: 1   MKKYHPASVFLHWIIFLLFVVALAAIELRGEVPKGTPLRATLKTVHMMAGQLVFLFVLFR 60
           M +Y   ++ LHW+I LL + A        ++P  TP +    + H   G  V      R
Sbjct: 1   MDRYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACAR 60

Query: 61  LAARWRFGVP--PALDAPAWQTRAAGIVHLLLYLVMFALPVTGILFTQAEGKDVMFFS-L 117
           L  R     P  PA   P WQ  AA  +HL LY +MFA+PV+G  ++ A G  V++   L
Sbjct: 61  LLWRLTHRAPAYPA-HMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVL 119

Query: 118 ALPHVIGQDPALSDTLQDIHELIGNTVYYLVGLHVAGALWHHFIHRDQIFQRM 170
            LP ++  +P L   L++ H  +   +     LHV  AL H FI RD IF+R+
Sbjct: 120 PLPVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRI 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.145    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 523,172
Number of extensions: 19857
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,245,805
Effective search space: 115859865
Effective search space used: 115859865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 127 (53.5 bits)