BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0223.0018.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313112|ref|YP_003777204.1| TRAP-type C4-dicarboxylate tran...   137   3e-34
gi|300310441|ref|YP_003774533.1| TRAP-type C4-dicarboxylate tran...   132   1e-32
gi|300309847|ref|YP_003773939.1| TRAP-type C4-dicarboxylate tran...   130   3e-32

>gi|300313112|ref|YP_003777204.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 344

 Score =  137 bits (345), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 91/141 (64%)

Query: 4   TAXMTRRTALKATASAVGLLAAGANVVRAQTTVFNYKVATNVPVTHPIYVRLNEATEKIK 63
           T  +TRR  LK  + A    A G     A    F +K A N+PVTHP+  R  E    I 
Sbjct: 5   TGKITRRNFLKTASVASAAAATGLVSTSAHAAEFTFKYANNLPVTHPMNARAKEMAAAIA 64

Query: 64  AETNGKVDIRVFPNGQLGSDTDLLSQVRSGSLEFLTLPGVVLANLVPMASLNSVGFAFRD 123
            ++ G+++++++PN QLG+DTD+LSQVR+G+++F TL  ++L  LVP A ++ +GFAF+D
Sbjct: 65  EQSKGRIELQLYPNNQLGTDTDMLSQVRAGAIDFFTLSPLILGTLVPAAQISGIGFAFKD 124

Query: 124 YPSVWKAMDGDLGQYIRNHIE 144
           Y  VW AMDG+LG ++R  IE
Sbjct: 125 YSQVWPAMDGELGAHVRKQIE 145


>gi|300310441|ref|YP_003774533.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 348

 Score =  132 bits (333), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 86/139 (61%)

Query: 7   MTRRTALKATASAVGLLAAGANVVRAQTTVFNYKVATNVPVTHPIYVRLNEATEKIKAET 66
           ++RR  LKA A    L         A    FNYK AT    +HP+  R  +A ++I+  T
Sbjct: 13  VSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIREAT 72

Query: 67  NGKVDIRVFPNGQLGSDTDLLSQVRSGSLEFLTLPGVVLANLVPMASLNSVGFAFRDYPS 126
            G++DI++FP  QLGSDTDL+SQ+R+G +EF     VVL+ LVP A + + GFAF DY  
Sbjct: 73  GGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHDYKE 132

Query: 127 VWKAMDGDLGQYIRNHIEK 145
           VW+AMDG LG Y+R  IEK
Sbjct: 133 VWQAMDGPLGAYVRAQIEK 151


>gi|300309847|ref|YP_003773939.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score =  130 bits (328), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 87/139 (62%)

Query: 7   MTRRTALKATASAVGLLAAGANVVRAQTTVFNYKVATNVPVTHPIYVRLNEATEKIKAET 66
           +TRR  LKA A    L         A    F+YK AT    +HP+  R  EA ++I+  T
Sbjct: 10  VTRRNMLKAGAVGAALPLFSILSRPASAAEFSYKFATGQDPSHPVNKRAQEAIDRIRNAT 69

Query: 67  NGKVDIRVFPNGQLGSDTDLLSQVRSGSLEFLTLPGVVLANLVPMASLNSVGFAFRDYPS 126
           NG+++I++FP  QLGSDTDL+SQVR+G +EF      VL+ LVP A + + GFAF DY +
Sbjct: 70  NGRLEIKLFPANQLGSDTDLMSQVRNGGVEFFNQANTVLSTLVPAAGIVNTGFAFHDYGA 129

Query: 127 VWKAMDGDLGQYIRNHIEK 145
           VWKAMDG LG ++R  IEK
Sbjct: 130 VWKAMDGPLGAHVRAQIEK 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 360,772
Number of extensions: 12770
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)