BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0223.0007.p
         (53 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein...   100   3e-23
gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein...    60   2e-11

>gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein)
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  100 bits (248), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 49/53 (92%)

Query: 1   MSPAHVATMIAKSPMGRLGYVEEVAEMVAWLCSGSCTFNTGAVFDLSGGRATY 53
           MSPAHV TMIAKSPM RLG V+EVA+M AWLCSGSC+FNTGAVFDLSGGRATY
Sbjct: 192 MSPAHVQTMIAKSPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDLSGGRATY 244


>gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein)
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score = 60.5 bits (145), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 36/52 (69%)

Query: 2   SPAHVATMIAKSPMGRLGYVEEVAEMVAWLCSGSCTFNTGAVFDLSGGRATY 53
           + AH+  M++K P  R   VEE+A MVAWL S   +F T +VFDLSGGRATY
Sbjct: 199 TQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDLSGGRATY 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.131    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 173,136
Number of extensions: 4508
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 53
Length of database: 1,619,870
Length adjustment: 26
Effective length of query: 27
Effective length of database: 1,496,760
Effective search space: 40412520
Effective search space used: 40412520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)