BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0223.0003.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309922|ref|YP_003774014.1| hypothetical protein Hsero_0587...   297   4e-82

>gi|300309922|ref|YP_003774014.1| hypothetical protein Hsero_0587
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  297 bits (760), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 145/184 (78%), Positives = 162/184 (88%), Gaps = 4/184 (2%)

Query: 2   LRDAGLPAQTDDGWGLDHGAWVPLRYLYPGADIPVVQLSLQAHQPPAYHYRIGQLLAPLA 61
           LRD GLPA TD GWGLDHGAWVPLRYLYP AD+PV+QLSLQ+ QPPAYH+++GQLLAPLA
Sbjct: 101 LRDGGLPAHTDGGWGLDHGAWVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLA 160

Query: 62  KEGILLVGSGSFTHNLRELRRNDADAAIGSDSAPHTVEFLQWFLAQMQSGNLEALLGYRE 121
           KEGILLVGSGSFTHNLRELRRNDAD    S  APHT++FLQWFL +MQ+G+ +AL GYR 
Sbjct: 161 KEGILLVGSGSFTHNLRELRRNDAD----SGDAPHTLQFLQWFLDRMQAGDRDALFGYRT 216

Query: 122 SAPHSVRLHPTDEHLLTLFFAMGAADDWTQSVHLDSGSTYHSLRMDAFAFGSQSSILADL 181
           +APH+VR HP+DEHLLTLFFAMGAADDWTQ VHLDSGSTYHSLRMDAFAFG+ S +LA  
Sbjct: 217 TAPHAVRNHPSDEHLLTLFFAMGAADDWTQLVHLDSGSTYHSLRMDAFAFGTGSRLLAQQ 276

Query: 182 PAAA 185
           P AA
Sbjct: 277 PVAA 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 663,336
Number of extensions: 28644
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)