BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0223.0001.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309924|ref|YP_003774016.1| N6-adenine-specific DNA methyla...   352   1e-98

>gi|300309924|ref|YP_003774016.1| N6-adenine-specific DNA methylase
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score =  352 bits (903), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 160/194 (82%), Positives = 183/194 (94%)

Query: 1   VHNQVPGGVHCSGSMIGAYQLNLRSRIASRVLLRLAHGSYKNENDIYDLTLEQEWENWFE 60
           VHNQVPGGVHCSG+++ AYQ+NL SRIASRVLLR+ HGSYKNENDIYDLTL Q WE+WF+
Sbjct: 41  VHNQVPGGVHCSGTLLAAYQMNLHSRIASRVLLRMGHGSYKNENDIYDLTLAQAWEDWFK 100

Query: 61  VSHTIRVDVTAVKSPLRSLEFATLKIKDAICDRFRERFDERPSVNTKTPDMRISGFLDAH 120
           VSHTIRVD+TAVKSPLRSLEF TLKIKDAICDRF ++F  RPSVNT+TPDMRI+GF+DAH
Sbjct: 101 VSHTIRVDLTAVKSPLRSLEFTTLKIKDAICDRFLDQFKLRPSVNTRTPDMRIAGFVDAH 160

Query: 121 NFTIYLDTSGEALFKRGWRDDTGEAPLRENLAAGLLRTSGWKPGMVLFDPMCGSGTILAE 180
           NFT+YLDTSGEALFKRGWR++TG+APLRENLAAGLLRT+GWKPG+ LFDPMCGSGTILAE
Sbjct: 161 NFTVYLDTSGEALFKRGWREETGDAPLRENLAAGLLRTAGWKPGVPLFDPMCGSGTILAE 220

Query: 181 AAQMLAGIPPGAXK 194
           AAQ++AG+PPGA +
Sbjct: 221 AAQIIAGVPPGARR 234



 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 38/42 (90%)

Query: 191 GAXKLLRLKEARKTPFFNGALECRLFRFDMVEGFNRREAAKP 232
           G  KL+RLKE+RKTPFFNGALECRLFRFDMV G+NRRE AKP
Sbjct: 370 GLPKLMRLKESRKTPFFNGALECRLFRFDMVAGYNRREEAKP 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 743,601
Number of extensions: 28967
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)