BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0222.0017.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbasp...   556   e-159

>gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I
           [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score =  556 bits (1432), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 262/349 (75%), Positives = 300/349 (85%), Gaps = 1/349 (0%)

Query: 1   MSEPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNGCGRWDLLDVVRTTYALRPEG 60
           + EPGTIGVGYNTIRFDDE+TRFMFWRNLIDPYAREWQNGCGRWDLLDVVR TYALRP+G
Sbjct: 87  LGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYAREWQNGCGRWDLLDVVRLTYALRPQG 146

Query: 61  IAWPKKEDGVTPSFKLEHLSKANGLLHEAAHDALSDVRATIAFARLIRDRQPRLFDFCLA 120
           I WPKK+DG   SFKLEHLSKANGL+HEAAHDALSDVRATIA ARLIR   PRLFDF LA
Sbjct: 147 IQWPKKDDGSI-SFKLEHLSKANGLVHEAAHDALSDVRATIALARLIRQNNPRLFDFALA 205

Query: 121 LHKKDRVAAELGLPLAKPFLHVSGMFPAAQGCLAVMWPLGTHPTNKNEVIAWDLSRDPRE 180
           L+KKD+ AAE+GLP+ +PFLH SGMFP A GCLA+MWPLG HPTNKNEVIAWDL  DP E
Sbjct: 206 LYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLALMWPLGMHPTNKNEVIAWDLRHDPSE 265

Query: 181 LAGLDADTIRTRMFSKTDELPEGVTRLPVKTIHLNKSPMVIASLKTLTAQRAAEFNLDID 240
           LA LDA T+R R+FSK D+LPEGV RLPVK+IHLNKSPMV+ SLKTL+A+RAAE ++D++
Sbjct: 266 LATLDAATVRERLFSKRDQLPEGVERLPVKSIHLNKSPMVVGSLKTLSAERAAELDIDVE 325

Query: 241 AALQNAAAAAELPEMNAIWAKVFQRPKEAPHDVDEDLYGGFVGNNDRRQLTQLRALTPLQ 300
           AAL++A  AA LP++  +W++V+QR  E P DVDEDLYGGF+GN DRRQL QLRAL+P  
Sbjct: 326 AALRHADKAAALPDLTRLWSEVYQRESEGPADVDEDLYGGFIGNGDRRQLNQLRALSPQA 385

Query: 301 LAQANVSFDDVRLEELLFRYRARNFPETLAPEETQRWEEHRAARLFEGQ 349
           LA A+V+FDD RL E+LFRYRAR+FPETL+PEE Q WEEHRAA    G+
Sbjct: 386 LATASVAFDDARLNEILFRYRARSFPETLSPEEAQHWEEHRAAAPVRGR 434


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,237,849
Number of extensions: 52042
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)