BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0222.0011.p
         (172 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312916|ref|YP_003777008.1| hypothetical protein Hsero_3622...   286   6e-79

>gi|300312916|ref|YP_003777008.1| hypothetical protein Hsero_3622
           [Herbaspirillum seropedicae SmR1]
          Length = 337

 Score =  286 bits (732), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 145/170 (85%), Positives = 156/170 (91%), Gaps = 1/170 (0%)

Query: 1   MLRQKVLDGAPFDNSMELFAELLRCLADGFDARVAQLNDKVDDIEESVLSDRRPEDRSEL 60
           MLRQKVLDG  FDN M+LFAELLRCLADGF+AR+ +LNDKVDDIE SVLSDRR EDRSEL
Sbjct: 138 MLRQKVLDGGDFDNPMDLFAELLRCLADGFNARLDKLNDKVDDIEFSVLSDRRAEDRSEL 197

Query: 61  SAIRRQLAELRRHITPERRLLSQLNRLRPSWVPTAALEELNHALDELNELHLTLEALYER 120
           S IRRQLAELRR+I PERR+L+Q +RLRPSWVP AALE+L HALDELNELH T+EA+YER
Sbjct: 198 SGIRRQLAELRRYIAPERRILAQFHRLRPSWVPLAALEDLTHALDELNELHSTVEAVYER 257

Query: 121 AKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAGXCPG 170
           AKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAG  PG
Sbjct: 258 AKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAG-LPG 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 487,772
Number of extensions: 17095
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,245,805
Effective search space: 115859865
Effective search space used: 115859865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)