BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0222.0008.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312914|ref|YP_003777006.1| glutaminyl-tRNA synthetase [Her...   269   2e-73

>gi|300312914|ref|YP_003777006.1| glutaminyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 583

 Score =  269 bits (688), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 132/146 (90%)

Query: 97  RAVAVLRPLKLIIDNFPEGQSVECSAPVYPPAHPLHDSEHRLFPITKNLWIEKEDFMEVP 156
           RAVAVLRPLKLIIDNFPEG S++CSAPVYPPAHP HD+ HR FPITK LWIE+EDFME P
Sbjct: 368 RAVAVLRPLKLIIDNFPEGVSIDCSAPVYPPAHPEHDTAHRHFPITKELWIEREDFMEEP 427

Query: 157 TKGYFRLFPGNKVRLRYGYVVECTGCDKDADGNVVAVHCNYFEDSKSGTPGSANYKVKGN 216
           TKGYFRLFPGNKVRLRYGYVVECTGCDKD  GNV+AVHCNYFEDSKSGT GS+NYKVKGN
Sbjct: 428 TKGYFRLFPGNKVRLRYGYVVECTGCDKDEHGNVIAVHCNYFEDSKSGTEGSSNYKVKGN 487

Query: 217 LHWVSADHALEAEVRLYDRLFTRAPP 242
           LHWVSA+HAL  EVRLYDRLF+   P
Sbjct: 488 LHWVSAEHALATEVRLYDRLFSDPHP 513



 Score =  190 bits (482), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 83/95 (87%), Positives = 93/95 (97%)

Query: 1   MRDGKHADGTLILRARIDMASPNMNLRDPAIYRIRHATHHNTGDKWCVYPMYSYAHPIED 60
           MRDGKH DG++ILRA+IDMASPNMNLRDPAIYRIRHATHHNTGDKW VYPMY++AHPIED
Sbjct: 182 MRDGKHPDGSMILRAKIDMASPNMNLRDPAIYRIRHATHHNTGDKWRVYPMYTFAHPIED 241

Query: 61  ALESITHSICTLEFEDQRPFYDWVLERLAEEGFFQ 95
           ALE+I+HSICTLEFEDQRPFYDW+LE+LAEEGFF+
Sbjct: 242 ALENISHSICTLEFEDQRPFYDWLLEQLAEEGFFK 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,030,785
Number of extensions: 38498
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)