BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0222.0003.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312912|ref|YP_003777004.1| transmembrane sensor histidine ...   433   e-122

>gi|300312912|ref|YP_003777004.1| transmembrane sensor histidine
           kinase-like ATPase [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  433 bits (1114), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/349 (60%), Positives = 270/349 (77%), Gaps = 11/349 (3%)

Query: 21  PTMIINLLCALVVTYLMRIGAGFVENLVFSICIGTTAMVLIDCGRLLLWGQDEPNKPGFL 80
           PT++INL+CAL VTYL+RIG GF ENL  S+CIG  AM+LI+  RLL+WG DEPNK GF 
Sbjct: 25  PTLLINLMCALAVTYLLRIGDGFYENLQISMCIGLLAMLLINGARLLIWGDDEPNKLGFA 84

Query: 81  LMLVIFAPLSFVIGNMIASSLLGYPLRIFTPGQANNTIGVIVLILVACVGATLFYWNREK 140
           ++L + APL+ ++G ++A+ LLG P+    P  ++N I V+VL  + C GAT+F+WNR+K
Sbjct: 85  VLLAVLAPLAVLLGRVLATLLLGQPVVSLVPEHSDNIIAVMVLTFLVCFGATVFFWNRQK 144

Query: 141 ITPPXAALEARNVVIEKQALQAQLQMLQAQIEPHMLFNTLATLQTLISSEPLRAQQMLDQ 200
           +    A L+A    +EK A+ AQLQ LQAQIEPHMLFNTLATLQ+LIS++PL+A+ ML+Q
Sbjct: 145 M----ATLQAHASEVEKHAVLAQLQTLQAQIEPHMLFNTLATLQSLISTDPLQAELMLNQ 200

Query: 201 LIHYLRATLSTSRSEQTSLGQEFDLIKAYLGLMSLRMGLRLTYTLQLPDELRRQRIAPML 260
           L+ YLR TLS SR++  SL QEFDLIKAYLGLMSLRMGLRL+YTLQLP  L R R+APML
Sbjct: 201 LVQYLRTTLSASRADSCSLQQEFDLIKAYLGLMSLRMGLRLSYTLQLPSHLGRLRLAPML 260

Query: 261 LQPLVENAIRHGLEPKIDGGDCTVSVTRHQELLIISVFDTGMGLHSTASYNRPDST---- 316
           LQPLVENAI+HGLEPK+DGG+CTV    H ++L++SV DTG+GL ++ S N+P +     
Sbjct: 261 LQPLVENAIKHGLEPKVDGGNCTVRAAVHNDMLVLSVLDTGVGLPTSVSLNQPPAQKEPV 320

Query: 317 ---HLGLENIRARLSVLYGPEAELTLTHNIPAGTVAQITIPMYALKKSY 362
              H GL+NIR RLS LYGP AEL +THN+PAG +AQITIP+ +LK ++
Sbjct: 321 IGMHFGLDNIRERLSTLYGPLAELIITHNVPAGAMAQITIPLKSLKSAH 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,002,029
Number of extensions: 37663
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)