BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0051.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide re...   112   5e-27
gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide re...    77   3e-16

>gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide
          reductase MsrA protein [Herbaspirillum seropedicae
          SmR1]
          Length = 183

 Score =  112 bits (281), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 58/67 (86%)

Query: 4  STETAILGGGCFWCLEAVYQQLKGVQHVESGYTGGHVQNPTYEQVCNGDTGHAEVVKLSF 63
          + E A+LGGGCFWCLEAVYQQ++GV+ VESGYTGG V NP+YEQVC G TGHAEVVKL+F
Sbjct: 8  AKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAF 67

Query: 64 DPALISF 70
          DP  IS+
Sbjct: 68 DPQQISY 74


>gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score = 77.0 bits (188), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 44/70 (62%)

Query: 1   VSTSTETAILGGGCFWCLEAVYQQLKGVQHVESGYTGGHVQNPTYEQVCNGDTGHAEVVK 60
            S  TET +L GGCFW ++ V+Q  +GV    SGY GG     TY  V +G TGHAE V+
Sbjct: 41  ASAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQ 100

Query: 61  LSFDPALISF 70
           +++DP  ISF
Sbjct: 101 VTYDPRKISF 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 290,187
Number of extensions: 9349
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)