BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0047.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310017|ref|YP_003774109.1| pyridoxamine 5'-phosphate oxida...   293   6e-81

>gi|300310017|ref|YP_003774109.1| pyridoxamine 5'-phosphate oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  293 bits (750), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 145/217 (66%), Positives = 168/217 (77%), Gaps = 16/217 (7%)

Query: 2   SIADLRKDYSRASLSENNVDADPIVQFSTWFDEALKAEIPEPNAMSVATVGERIFFXGAD 61
           S+ADLRKDYSRASLSE    ADPI QF+ WFDEA +A+IPEPNAMSVATVG+       D
Sbjct: 3   SLADLRKDYSRASLSETETAADPIDQFAIWFDEASRAQIPEPNAMSVATVGK-------D 55

Query: 62  GRPSSRIVLLKQVDAGGFTWFTNYHSRKGRDIEEHPHVALLFHWVELERQVRIEGRIEQV 121
           GRPSSRIVL+KQ D  GFTWFTNY SRKG D+ E+P+VALLFHWVELERQVRIEG+IE+V
Sbjct: 56  GRPSSRIVLIKQFDQQGFTWFTNYDSRKGIDVAENPYVALLFHWVELERQVRIEGKIERV 115

Query: 122 TAAESDAYFFSRPLRSQLGAIASEQSSPVDKRETLEMQFTAAEQKYGAHPVRPAHWGGYR 181
           +  ESDAYF+SRPL SQLGAIAS+QS  V+ RE LE Q+   +Q++G HP RP HWGGYR
Sbjct: 116 SQEESDAYFYSRPLASQLGAIASQQSRTVESREKLEQQYETTKQQFGEHPSRPEHWGGYR 175

Query: 182 VIPEKI---------LAXRIVYTRGADGAWSRQRLQP 209
           VIPE+I         +  R++YTR A G W RQRLQP
Sbjct: 176 VIPERIEFWQGRPSRMHDRVLYTRDASGQWQRQRLQP 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 652,284
Number of extensions: 25642
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)