BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0043.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310021|ref|YP_003774113.1| adenylosuccinate lyase [Herbasp...   210   2e-56

>gi|300310021|ref|YP_003774113.1| adenylosuccinate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  210 bits (534), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/108 (91%), Positives = 101/108 (93%)

Query: 1   VAFGYAVLAYDSCLRGLNKLEVNPTRLADDLDATWEVLAEPVQTVMRRYGIENPYEQLKE 60
           V FGY +LAYDSCLRGLNKLEVNP RLADDLDATWEVLAEPVQTVMRRYGIENPYEQLKE
Sbjct: 348 VGFGYTLLAYDSCLRGLNKLEVNPQRLADDLDATWEVLAEPVQTVMRRYGIENPYEQLKE 407

Query: 61  LTRGKGISKDALRDFINGLAIPQSAKDHLLAMTPANYIGEAIALAKNI 108
           LTRGKGISKDALRDFINGLAIPQ AKDHLLAMTPANYIG A+ LAK I
Sbjct: 408 LTRGKGISKDALRDFINGLAIPQEAKDHLLAMTPANYIGTAVELAKQI 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 340,938
Number of extensions: 12382
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)