BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0042.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310021|ref|YP_003774113.1| adenylosuccinate lyase [Herbasp...   492   e-140

>gi|300310021|ref|YP_003774113.1| adenylosuccinate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  492 bits (1266), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/263 (93%), Positives = 257/263 (97%)

Query: 1   MSLSALSALSPLDGRYAAKTDKLRPILSEAGFMHHRVKVEIAWLQALSAAGFAEIKPFSA 60
           MSLSALSALSPLDGRYA+KTDKLRP+LSEAGFMHHRVKVEIAWLQALS AGFAEIKPFSA
Sbjct: 1   MSLSALSALSPLDGRYASKTDKLRPLLSEAGFMHHRVKVEIAWLQALSEAGFAEIKPFSA 60

Query: 61  SATALLDKLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC 120
           +A ALLDKLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC
Sbjct: 61  TALALLDKLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC 120

Query: 121 TSEDINNTSHGMMLKSARDTVVLPALQGLVAKLTELAHEHAAVPMMSRTHGQPASPTTLG 180
           TSEDINNTSHGMMLK+ARDTV+LP+LQ ++ KLTELAHEHAAVPM+SRTHGQPASPTTLG
Sbjct: 121 TSEDINNTSHGMMLKAARDTVLLPSLQAVITKLTELAHEHAAVPMLSRTHGQPASPTTLG 180

Query: 181 KEIANVVARLQRAVKRIAAVEILGKMNGAVGNYNAHLSAYPETDWAAFSKNVIEQRLGLV 240
           KE+ANVVARLQRA KRIAAVEILGKMNGAVGNYNAHLSAYP+TDWAAFSK V+EQRLGLV
Sbjct: 181 KEVANVVARLQRAAKRIAAVEILGKMNGAVGNYNAHLSAYPQTDWAAFSKQVVEQRLGLV 240

Query: 241 FNPYTIQIEPHDYMAELFDAVAR 263
           FNPYTIQIEPHDYMAELFDAVAR
Sbjct: 241 FNPYTIQIEPHDYMAELFDAVAR 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 794,934
Number of extensions: 29743
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)