BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0034.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310029|ref|YP_003774121.1| tRNA (5-methylaminomethyl-2-thi...   241   1e-65
gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferas...    57   7e-10

>gi|300310029|ref|YP_003774121.1| tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score =  241 bits (616), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/122 (95%), Positives = 118/122 (96%)

Query: 1   VVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEYCSTRQDWIDAVSVADVVGV 60
           VVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEYCSTR+DWIDAVSVADVVGV
Sbjct: 6   VVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEYCSTREDWIDAVSVADVVGV 65

Query: 61  DIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMHLGADLIATPE 120
           DIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAM LGADLIAT  
Sbjct: 66  DIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGADLIATGH 125

Query: 121 TA 122
            A
Sbjct: 126 YA 127


>gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score = 56.6 bits (135), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/27 (88%), Positives = 26/27 (96%)

Query: 113 ADLIATPETAVPLLPQQLPPDYLARLA 139
           ADLIATPETA+PLLPQQLPPDYL R+A
Sbjct: 288 ADLIATPETAIPLLPQQLPPDYLERIA 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 384,418
Number of extensions: 11760
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)